View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_30 (Length: 357)
Name: NF20963_low_30
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_30 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 42682093 - 42682442
Alignment:
| Q |
13 |
aatatgatgccacataatttaatgagttta-----aacaaatgacttgccaacaaactatttcatcagaaacataatcaacatgaaatgacaattcttca |
107 |
Q |
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| T |
42682093 |
aatatgatgccacataatttaatgagtttaatttaaacaaatgacctgccaacaaactatttcatcagaaacataatcaacatgaaatgacaattcttca |
42682192 |
T |
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| Q |
108 |
tcaactttaaagggacacaaccaactaacggtattaaataaaagaaatatggctgttatatatgacacaattaaactaataacggaccaaaatctcgaat |
207 |
Q |
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| T |
42682193 |
tcaactttaaagggacacaaccaactaacggtattaaataaaagaaatatggctgttagatatgacataattagactaataacgaactaaaatctcgaat |
42682292 |
T |
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| Q |
208 |
tttgacgatcaaaatcttcaatatatgtaaatttgagaaactatcctttcagaaactttgttaacatgaaagaaacatttcttcattgattaaagtggac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
42682293 |
tttgacgatcaaaatcttcaatatatgtaaatttgagaaactatcctttcataaactttgttaacatgaaagaaacatatcttcgttgattaaagtggac |
42682392 |
T |
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| Q |
308 |
ttaaccaactaacgatatcaaataaaatcaatcttgaaaaaacatctagc |
357 |
Q |
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| T |
42682393 |
ttaaccaactaacgatatcaaataaaatcaatcgtgaaaaaacatctagc |
42682442 |
T |
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