View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_35 (Length: 339)
Name: NF20963_low_35
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 147 - 326
Target Start/End: Original strand, 42098118 - 42098286
Alignment:
| Q |
147 |
acaaggtaaagcaatataataaaacactgacaagattatggatcatgcaattttaaattttcatttggtctatccattcaagtcctaatttctttgtagg |
246 |
Q |
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| T |
42098118 |
acaaggtaaagcaatataataaaacaccgacaagattatggatcatgcaattttaaattttcatttgatctatccattcaagtcctaatttctttgtagg |
42098217 |
T |
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| Q |
247 |
tccaaggccgaatcaatttttcacgaatatcttaaaaagatatgatcaaggaaacatctaacttgattggtgtcgttgtc |
326 |
Q |
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| T |
42098218 |
tcctaggccga-----------acgaatatcttaaaaagatatgatcaaggaaacatctaacttgattggtgtcgttgtc |
42098286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 42097944 - 42098057
Alignment:
| Q |
16 |
catttctacaatatttcggattatatcttccaaaacgttcacatattgtgtttaaacttaaggtttggagggttcagattatataattctaaccaataca |
115 |
Q |
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| T |
42097944 |
cattgctacaatatttcggattatatcttcaaaaacgttcacatattgtgtttaaaattgaggtttggaaggttcaaattatataattcgaaccaatgca |
42098043 |
T |
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| Q |
116 |
gaacacaaaaattg |
129 |
Q |
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| T |
42098044 |
gaacacaaaaattg |
42098057 |
T |
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