View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_36 (Length: 335)
Name: NF20963_low_36
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 49300773 - 49300470
Alignment:
| Q |
16 |
atggagaaaattcctaggagaaccctaagaaatagtacannnnnnngtcaaggatggcatgaaagttatcaaattcaattctgtcttccaacaagaggac |
115 |
Q |
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| T |
49300773 |
atggagaaaattcctaggagaaccctaagaaatagtacattttttgtcaaaggatggcatgaaagttatcaaattcaattctgtcttccaacaagaggac |
49300674 |
T |
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| Q |
116 |
taatggacataaatttgtgtctatgtataataaataattgtaaaaaagagggtcttaccaaatgggataataatcaatgagaacttgcattcttgataca |
215 |
Q |
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| T |
49300673 |
taatggacataaatttgtgtctatgtataataaataattctaaaaaagagggtcttaccaaatgggataataatcaatgagaacttgcattcttgataca |
49300574 |
T |
|
| Q |
216 |
acccaaatgagatcattcctcatcattccatgtgttgctccaaatccatcactgagtagtccagacatccatacatggtttaatgctgtttcctgcacga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49300573 |
acccaaatgagatcattcctcatcattccatgtgttgctccaaatccatcactgagtagtccagacatccatacatggtttaatgctgtttcctgcacga |
49300474 |
T |
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| Q |
316 |
aatt |
319 |
Q |
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|||| |
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| T |
49300473 |
aatt |
49300470 |
T |
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