View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20963_low_38 (Length: 326)

Name: NF20963_low_38
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20963_low_38
NF20963_low_38
[»] chr2 (19 HSPs)
chr2 (18-306)||(9292322-9292610)
chr2 (27-300)||(9357586-9357856)
chr2 (53-300)||(9283644-9283891)
chr2 (45-292)||(9316449-9316696)
chr2 (45-299)||(9329020-9329274)
chr2 (56-300)||(10353553-10353797)
chr2 (47-305)||(9321399-9321657)
chr2 (53-301)||(9060588-9060836)
chr2 (147-305)||(9275044-9275202)
chr2 (154-300)||(10348312-10348458)
chr2 (53-117)||(10336273-10336337)
chr2 (53-111)||(8573142-8573200)
chr2 (154-223)||(10372391-10372460)
chr2 (55-117)||(10372301-10372363)
chr2 (53-122)||(7115271-7115340)
chr2 (27-112)||(9274915-9275000)
chr2 (60-117)||(10348227-10348284)
chr2 (251-299)||(7115107-7115155)
chr2 (159-300)||(8572959-8573100)
[»] chr3 (1 HSPs)
chr3 (53-305)||(37462927-37463179)
[»] chr4 (1 HSPs)
chr4 (55-300)||(26575304-26575549)
[»] scaffold0667 (2 HSPs)
scaffold0667 (53-117)||(4912-4976)
scaffold0667 (165-300)||(5018-5153)
[»] chr8 (2 HSPs)
chr8 (53-115)||(41966362-41966424)
chr8 (167-292)||(41966185-41966310)
[»] chr1 (4 HSPs)
chr1 (54-115)||(29467429-29467489)
chr1 (54-112)||(29452955-29453013)
chr1 (54-111)||(29442970-29443027)
chr1 (58-115)||(29423702-29423759)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 9292322 - 9292610
Alignment:
Q  18 acctgtggatcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292322 acctgtggatcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 9292421  T
Q  118 cacctgcgcgatcaatgttttcagactcaagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgt 217  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9292422 caccggcgcgatcaatgttttcagactcgagaatgttagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgt 9292521  T
Q  218 gatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292522 gatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatga 9292610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 9357586 - 9357856
Alignment:
Q  27 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgc 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||   |||    
T  9357586 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacac---cgc 9357682  T
Q  127 gatcaatgttttcagactcaagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 226  Q
      ||||||||   |||    |||||||||||||||| ||||||||| |||||||||||   ||||||| |  ||||| ||||| ||| || |||||||||    
T  9357683 cgtcaatgttgaaagatcggagaatgttagggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgtt 9357782  T
Q  227 aggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagag 300  Q
     | ||||| ||||||| ||||   ||||| || |||||| |||||||||||||||||||||||||| |||||||    
T  9357783 ggcggcgttaggatgcctgaaagcgatttcgccattggagatggcgaggaggccgttacatgaaccgataagag 9357856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 53 - 300
Target Start/End: Complemental strand, 9283891 - 9283644
Alignment:
Q  53 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 152  Q
    ||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||  |||| ||||||||||||||||| | ||||    
T  9283891 ccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcatacaccgccgcgttcaatgttttcagactccacaatg 9283792  T
Q  153 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgt-gaagcag 251  Q
    |||||||||| ||||||||||||||||||||||| ||||||| | ||||||| |||| ||| |||||||||  | | | |||  ||||||||  |||||     
T  9283791 ttagggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttcagttgcgtcgtttggatgcgtaaaagca- 9283693  T
Q  252 atttggctattggaaatggcgaggaggccgttacatgaaccaataagag 300  Q
    ||| ||| |||| | ||||||||||||||||||||||||||||||||||    
T  9283692 attgggccattgtagatggcgaggaggccgttacatgaaccaataagag 9283644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 45 - 292
Target Start/End: Original strand, 9316449 - 9316696
Alignment:
Q  45 tcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagact 144  Q
    ||||| |||||||| |||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||| |||  ||||||     || ||||| |    
T  9316449 tcggccatccaagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcatataccgccgcgattgggtttgtcagatt 9316548  T
Q  145 caagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgt 244  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||| | |||||||||||| ||| |||||||||||| | | ||||||||||| |    
T  9316549 caagaatgttagggatagcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcat 9316648  T
Q  245 gaagcagatttggctattggaaatggcgaggaggccgttacatgaacc 292  Q
    |||   |||||| | ||||||||||||||| |||||||||||||||||    
T  9316649 gaaagcgatttgaccattggaaatggcgagaaggccgttacatgaacc 9316696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 299
Target Start/End: Original strand, 9329020 - 9329274
Alignment:
Q  45 tcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagact 144  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||| |||||| ||||||| |||||||||||||       |||||  ||||| ||||| |    
T  9329020 tcggctatccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagatt 9329119  T
Q  145 caagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgt 244  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||| | |||||||||||| ||| |||||||||||| ||| ||| ||| | | |    
T  9329120 caagaatgttagggatagcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccct 9329219  T
Q  245 gaagcagatttggctattggaaatggcgaggaggccgttacatgaaccaataaga 299  Q
     ||   |||||||| || ||| || || | ||||||||| |||||||| ||||||    
T  9329220 aaaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataaga 9329274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 56 - 300
Target Start/End: Original strand, 10353553 - 10353797
Alignment:
Q  56 agagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgtta 155  Q
    ||||||||||||||||||||||||||||| ||  | |||| |||||||||| ||||||||||  |   | || | |  ||| ||||| |  |||||||||    
T  10353553 agagattctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataagcagccacggttagggttgtcagattggagaatgtta 10353652  T
Q  156 gggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagattt 255  Q
    ||||||| ||||||||||||||||||||||| ||| ||| | ||||| |||||| | | |||||||||||| ||||||| ||||||||||||    |||     
T  10353653 gggataggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaaagctatta 10353752  T
Q  256 ggctattggaaatggcgaggaggccgttacatgaaccaataagag 300  Q
     ||  | ||| |||||||||||||||||||||||||| |||||||    
T  10353753 cgccgtgggacatggcgaggaggccgttacatgaaccgataagag 10353797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 305
Target Start/End: Original strand, 9321399 - 9321657
Alignment:
Q  47 ggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgc-gcgatcaatgttttcagactc 145  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||| | | || |||||  ||||| || || ||    
T  9321399 ggctaaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcata-agcagcagcgattgatgttgtcggattc 9321497  T
Q  146 aagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtg 245  Q
     | ||||| |||||||| |||||| || |||||||| || | ||| ||| ||||| |||||||| ||| |||||||||||| |||  || ||||||  ||    
T  9321498 cataatgtcagggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattg 9321597  T
Q  246 aagcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatg 305  Q
    ||    | |||||  | ||| |||||||||||||||||||| ||||| ||||||| ||||    
T  9321598 aaagccagttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatg 9321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 53 - 301
Target Start/End: Complemental strand, 9060836 - 9060588
Alignment:
Q  53 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 152  Q
    ||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||  ||||||    ||| ||||| ||   ||||    
T  9060836 ccaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcatataccgccgcgattggggttgtcagagtcctcaatg 9060737  T
Q  153 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcaga 252  Q
    |||||||||| |||||||| |||||||||  ||| || |||  | |||||||||||| ||| |||| |||||  |  | | | ||| ||| ||||    |    
T  9060736 ttagggataggaagagggataaaagggatggtccgatctttgcgggtgttagggttccagattgtggtttcgagaacgccatgagggtgcttgaaaacaa 9060637  T
Q  253 tttggctattggaaatggcgaggaggccgttacatgaaccaataagagg 301  Q
    |||  |  | ||||| |||||||||||||||||||||||||||||||||    
T  9060636 tttctccgtcggaaagggcgaggaggccgttacatgaaccaataagagg 9060588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 305
Target Start/End: Original strand, 9275044 - 9275202
Alignment:
Q  147 agaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga 246  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||||   |||||||||||| ||| ||| ||||| || |   ||| ||||||| |||    
T  9275044 agaatgttaggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcctga 9275143  T
Q  247 agcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatg 305  Q
    ||  | |||||| |||||| || || | |||||||||||||||||| ||||||| ||||    
T  9275144 aggcggtttggccattggagatagcaatgaggccgttacatgaacctataagagccatg 9275202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 154 - 300
Target Start/End: Original strand, 10348312 - 10348458
Alignment:
Q  154 tagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagat 253  Q
    |||| |||| |||||||||||||||||||||   ||||||| | |||||||||||| ||| ||||||||||||  ||  || ||||||||||||   |||    
T  10348312 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgat 10348411  T
Q  254 ttggctattggaaatggcgaggaggccgttacatgaaccaataagag 300  Q
    |   |   |||| |||||||||||||||||||||||||| |||||||    
T  10348412 tacccctgtggagatggcgaggaggccgttacatgaaccgataagag 10348458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 10336273 - 10336337
Alignment:
Q  53 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 117  Q
    |||||||||||||||||||||||||||| ||| ||||| |||| ||||||| |||||||||||||    
T  10336273 ccaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcata 10336337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 8573200 - 8573142
Alignment:
Q  53 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 111  Q
    ||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||    
T  8573200 ccaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 10372391 - 10372460
Alignment:
Q  154 tagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 223  Q
    |||| |||| |||||||||||||||||||| |||||||||| | |||||||||||| ||| |||||||||    
T  10372391 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 10372460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 10372301 - 10372363
Alignment:
Q  55 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 117  Q
    ||||||||||||||||||||| |||||||| ||| | |||| |||||||||| ||||||||||    
T  10372301 aagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcata 10372363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 7115340 - 7115271
Alignment:
Q  53 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacct 122  Q
    ||||||||||||||| |||||||||||  | ||||| |||||| ||||||||||||||| ||||| ||||    
T  7115340 ccaagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcatagacct 7115271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 9274915 - 9275000
Alignment:
Q  27 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 112  Q
    ||||||||||||||||  || |||| ||| ||||||||||| ||||| |||||||||| ||| |||||| |||| || ||||||||    
T  9274915 tcaaaagagtaatgtatatcagctaaccatgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 10348227 - 10348284
Alignment:
Q  60 attctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 117  Q
    |||||||||||||||||||| |||| || | ||||| |||||||||||||||||||||    
T  10348227 attctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 10348284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 7115155 - 7115107
Alignment:
Q  251 gatttggctattggaaatggcgaggaggccgttacatgaaccaataaga 299  Q
    |||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  7115155 gatttggccattggagatggcgaggaggccgttacatgaaccgataaga 7115107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 300
Target Start/End: Complemental strand, 8573100 - 8572959
Alignment:
Q  159 atagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggc 258  Q
    |||| |||||||||||||||||||||   ||||||| | |||||||||||| ||| || ||||| ||| | | | | ||| || || ||   ||||   |    
T  8573100 ataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgagtcaaagcgattaaac 8573001  T
Q  259 tattggaaatggcgaggaggccgttacatgaaccaataagag 300  Q
     ||| ||||||||||||||||||||||||||||| |||||||    
T  8573000 cattagaaatggcgaggaggccgttacatgaaccgataagag 8572959  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 53 - 305
Target Start/End: Original strand, 37462927 - 37463179
Alignment:
Q  53 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 152  Q
    |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||  |   |||| | |  ||| |  || || | ||||    
T  37462927 ccaagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataagcagccgcggttagggttgtttgattccataatg 37463026  T
Q  153 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcaga 252  Q
    | ||||| ||  | |||||||||||||||||||  ||||||| | |||||||||||| ||| |||||||||||| | ||||| ||||||||||||   ||    
T  37463027 taagggacaggcatagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcga 37463126  T
Q  253 tttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatg 305  Q
    |||||| |||||| || ||||||||||||||||||||||| ||||||| ||||    
T  37463127 tttggccattggagatagcgaggaggccgttacatgaaccgataagagccatg 37463179  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 55 - 300
Target Start/End: Original strand, 26575304 - 26575549
Alignment:
Q  55 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgtt 154  Q
    |||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||  |   | |||| |  ||| ||||| |  ||||||||    
T  26575304 aagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataagcagccacgattagggttgtcagattggagaatgtt 26575403  T
Q  155 agggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatt 254  Q
    |||||| | ||||||||||||||||||||||| || ||||   |||| ||||||| ||| || ||||||||| |||||||  |||||||||||    |||    
T  26575404 agggatgggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaaagccatt 26575503  T
Q  255 tggctattggaaatggcgaggaggccgttacatgaaccaataagag 300  Q
      ||  | ||| |||||||||||||||||||||||||| |||||||    
T  26575504 acgccgtgggacatggcgaggaggccgttacatgaaccgataagag 26575549  T

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Target: scaffold0667 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 4912 - 4976
Alignment:
Q  53 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 117  Q
    |||||||| |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  4912 ccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 4976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 5018 - 5153
Alignment:
Q  165 agagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga-agcagatttggctattg 263  Q
    ||||||||||||||||||||   ||||||| |  ||||||||||| ||| |||||||||||| | ||||| ||||||  ||| ||| ||||| ||  |||    
T  5018 agagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagc-gatttcgccgttg 5116  T
Q  264 gaaatggcgaggaggccgttacatgaaccaataagag 300  Q
    |||| |||||||||||||||||||||||| |||||||    
T  5117 gaaacggcgaggaggccgttacatgaaccgataagag 5153  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 41966424 - 41966362
Alignment:
Q  53 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 115  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||    
T  41966424 ccaagagattctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca 41966362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 292
Target Start/End: Complemental strand, 41966310 - 41966185
Alignment:
Q  167 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 266  Q
    |||||||||||||||||||| |||||||    ||||||||||| ||| ||||||||| ||   | ||||||| |  | |||   ||||| || ||||||     
T  41966310 agggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggag 41966211  T
Q  267 atggcgaggaggccgttacatgaacc 292  Q
    |||  |||||||||||||||||||||    
T  41966210 atgcagaggaggccgttacatgaacc 41966185  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 29467489 - 29467429
Alignment:
Q  54 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 115  Q
    |||||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||    
T  29467489 caagagattctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca 29467429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 29453013 - 29452955
Alignment:
Q  54 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 112  Q
    ||||||||||||||||||||||||||| || |||| |||||| |||| |||||||||||    
T  29453013 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 29452955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 29443027 - 29442970
Alignment:
Q  54 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 111  Q
    ||||||||||||| |||||||||||||  ||| ||||||||| |||||||||||||||    
T  29443027 caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa 29442970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 29423702 - 29423759
Alignment:
Q  58 agattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 115  Q
    ||||| ||||||||||||||||  | |||||||||||| |||||||||||| ||||||    
T  29423702 agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgca 29423759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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