View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20963_low_4 (Length: 706)

Name: NF20963_low_4
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20963_low_4
NF20963_low_4
[»] chr1 (1 HSPs)
chr1 (20-691)||(16511755-16512428)


Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 20 - 691
Target Start/End: Complemental strand, 16512428 - 16511755
Alignment:
Q  20 attctctctttcctggtttcagaaatcaggaaactcaatgtaaagaaacttcactgagcaaattaacga---aaataaaatacagtgaaacatttgctta 116  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||| ||||   ||||||||||||||||||||||| ||||    
T  16512428 attctctctttcctggtttcaaaaaacaggaaacccaatgtaaagaaacttcactgtgcaaattgacgacgaaaataaaatacagtgaaacatttcctta 16512329  T
Q  117 cacttttataagaagctgataggacaccataagttgtcaagacaacatcatactctaacagcaaatcaggattactggttcttcccccaccataatgaac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16512328 cacttttataagaagctgataggacaccataagttgtcaagacaacatcatagtctaacagcaaatcaggattactggttcttcccccaccataatgaac 16512229  T
Q  217 aaatatggatatgctgcctggttttgaatgcgtttcaagttcatcctgaagattttgaatacttgtaaattacctttcacataaatattagttgagatat 316  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16512228 aaatatggatatgctgcctggttttgagtgcgtttcaagttcatcctgaagattttgaatacttgtaaattaccttttacataaatattagttgagatat 16512129  T
Q  317 atnnnnnnnncaactatgctttttctaattggcctaattagagaggaatcttaccttccactggcccaacaacgccataggacaaacaattaaagtacca 416  Q
    ||        ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  16512128 atacaaaaaacaactatgc-ttttctaattggcctagttagagaggaatcttaccttccactgacccaacaacgccataggacaaacaattaaagtgcca 16512030  T
Q  417 ccttctaaattagacgatgggttaacattcctcctcttagctgaaaaaatattgtcatatacgctctctccatcactgtcttctgacttcaacctgcctg 516  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16512029 ccttctaaattagacgatgggtcaacatttctcctcttagctgaaaaaatattgtcatatacgctctctccatcactgtcttctgacttcaacctgcctg 16511930  T
Q  517 gattactaagaatcagtgcaattgtcataacagtctttccaagtcccattgcatctgccaaaatctataatgnnnnnnnntacaaattagataaactgtt 616  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||    
T  16511929 gattactaagaatcagtgcaattgtcataacggtctttccaagtcccattgcatctgccaaaatctataatgaaaaaaaatacaaattagataaactctt 16511830  T
Q  617 caaattgaatgtaacaagtaaagttctaaaatttgatggctttaaacaaactcactcctcctcttgccatctgtg 691  Q
    |||| ||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16511829 caaactgaatgtaacatgtagagttcaaaaatttgagggctttaaacaaactcactcctcctcttgccatctgtg 16511755  T

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