View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_42 (Length: 295)
Name: NF20963_low_42
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 8e-95; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 7970128 - 7969848
Alignment:
| Q |
19 |
ccaagacctaccagttttactcttgatcacctaactttgttatcataaccaagttgcaacttcccttgacaatgatgatatctattttct---------- |
108 |
Q |
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| T |
7970128 |
ccaagacctaccagttttactcttgatcacctaactttgttatcataaccaagttgcaacttcccttgacaatgatgatatctattttctctatgctttt |
7970029 |
T |
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| Q |
109 |
-----------gccaatgaactatctattttccaatttcaatgtacataactgagtttctattcaatgaaggaaattgcttctattttgtgtgtgataga |
197 |
Q |
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| T |
7970028 |
ctctattttctggcaatgaactatctattttccaatttcaatgcacataactgagtttctattcaatgaaggaaattgcttctattttgtgtgtgataga |
7969929 |
T |
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| Q |
198 |
ttcaatga-nnnnnnnccaacttaagtgttttaagtgaatttggtgctgtagcatctataatagatgcttgattgaagtac |
277 |
Q |
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| T |
7969928 |
ttcaatgattatttttccaacttaagtgttttaagtgaatttggtgctgtagcatctataatagatgcttgattgaagtac |
7969848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 101 - 277
Target Start/End: Original strand, 8033759 - 8033936
Alignment:
| Q |
101 |
tattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttctattcaatgaaggaaattgcttctattttgtgtgtgatagattc |
200 |
Q |
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| T |
8033759 |
tattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttctattcaatgaaggaaattgcatctattttgtgtgtgatagattc |
8033858 |
T |
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| Q |
201 |
aatga-nnnnnnnccaacttaagtgttttaagtgaatttggtgctgtagcatctataatagatgcttgattgaagtac |
277 |
Q |
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| T |
8033859 |
aatgattttttttccaacttaagtgttttatgtgaatttggcgctgtagcatctataatagatgcttggttgaagtac |
8033936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 8033645 - 8033734
Alignment:
| Q |
19 |
ccaagacctaccagttttactcttgatcacctaactttgttatcataaccaagttgcaacttcccttgacaatgatgatatctattttct |
108 |
Q |
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| T |
8033645 |
ccaagacctaccagttttactcttgatcacctaactttgttatcataaccaagttacaacttcccttgacaatgatgatatctactttct |
8033734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 8043581 - 8043670
Alignment:
| Q |
19 |
ccaagacctaccagttttactcttgatcacctaactttgttatcataaccaagttgcaacttcccttgacaatgatgatatctattttct |
108 |
Q |
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| T |
8043581 |
ccaagacctaccagttttactcttgatcacctaactttgttattataacgaagttacaacttccctggacaatgatgaaatctattttct |
8043670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 8043695 - 8043750
Alignment:
| Q |
101 |
tattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttc |
156 |
Q |
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| T |
8043695 |
tattttctgccaatgaactatctatttttcaatttcaatgtacatatttgagtttc |
8043750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 41380498 - 41380443
Alignment:
| Q |
101 |
tattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttc |
156 |
Q |
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| T |
41380498 |
tatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttc |
41380443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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