View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_46 (Length: 276)
Name: NF20963_low_46
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 43077641 - 43077895
Alignment:
| Q |
1 |
ggacacactgtatgatcatattggtaggcactattacaaagattgttatattgaaggctcagttgatttcatatttggcaatgctctctctctttttgag |
100 |
Q |
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| T |
43077641 |
ggacacactgtatgatcatattggtaggcactattataaagattgttatattgaaggctctgttgatttcatatttggcaatgctctctctctttttgag |
43077740 |
T |
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| Q |
101 |
gtaattaattagtttcattttcattttcaagatgaaatcgttct-aaaatttgactaatgaagttggtaataacatatataggggtgtcacgtgcatgca |
199 |
Q |
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| T |
43077741 |
gtaattaattagtttcattttcattttcaagatgaaatcgttctaaaaatttgactaatgaagttggtaataac----ataggggtgtcacgtgcatgca |
43077836 |
T |
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| Q |
200 |
atagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacac |
258 |
Q |
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| T |
43077837 |
atagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacac |
43077895 |
T |
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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 33965358 - 33965261
Alignment:
| Q |
5 |
acactgtatgatcatattggtaggcactattacaaagattgttatattgaaggctcagttgatttcatatttggcaatgctctctctctttttgaggt |
102 |
Q |
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| T |
33965358 |
acactttatgatcatattggtagacattactataaagattgttacattgaaggttctgttgatttcatatttggcaatgctctttctctatttgaggt |
33965261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 33964273 - 33964188
Alignment:
| Q |
178 |
ataggggtgtcacgtgcatgcaatagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacacaggtt |
263 |
Q |
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|||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| | ||| |||||||||||| |
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| T |
33964273 |
atagggatgtcacgtgcatgcaatagcaagaaatacaggagcactaacagcacaaggaaggagcagtatgttacaagacacaggtt |
33964188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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