View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_5 (Length: 669)
Name: NF20963_low_5
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 602; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 11 - 653
Target Start/End: Complemental strand, 34254269 - 34253627
Alignment:
| Q |
11 |
caaaggtgacgactgtttaaagatgatttaattaaggtatcaaatcaatagctgagatcaattaatgcatgcagccgcgtatatttgtaaatgtagggaa |
110 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34254269 |
caaaggtgaagactgtttaaagatgatttaattaaggtatcaaatcaatagctgagatcaattaatgcatgcagccgcgtatatttgtaaatgtagggaa |
34254170 |
T |
|
| Q |
111 |
tccatatcccattaagtaatatcttcttacctgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacagg |
210 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34254169 |
tccatatcccattaagtaatatcttcttacttgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacagg |
34254070 |
T |
|
| Q |
211 |
agaatcaataagaagaacgttggcaacagcnnnnnnntcgaaatgaaaatgatgtaacacacaatagttcatagcatacattttttgaatggttaaacaa |
310 |
Q |
| |
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||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34254069 |
agaatcaataagaagaatgttggcaactgcaaaaaaatcgaaatgaaaatgatgtaacacacaatagttcatagcatacattttttgaatggttaaacac |
34253970 |
T |
|
| Q |
311 |
aaaaccactcaccttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatgaaaaggaccaatttcctcagcctcaccataagc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34253969 |
aaaaccactcaccttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatgaaaaggaccaatttcctcagcctcaccataagc |
34253870 |
T |
|
| Q |
411 |
aatagatgaacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatctatatgatctgcttcaatgaaccagtaaaatagtgtccta |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34253869 |
aatagatgaacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatctatatgatctgcttcaatgaaccagtaaaatagtgtccta |
34253770 |
T |
|
| Q |
511 |
ccaacatccttgttaactgtaatataaccagaatagtgttcaaagttgatgttgaagttttgacctgggagtgctgttccaatcctgtcttgctcttgtt |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34253769 |
ccaacatccttgttaactgtaatataaccagaatagtgttcaaagttgatgttgaagttttgacctgggagtgctgttccaatcctgtcttgctcttgtt |
34253670 |
T |
|
| Q |
611 |
ggtggtcagttgtaaaggctaatatgatgttgcataggaaaag |
653 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34253669 |
ggtggtcagttgtaaaggctaatatgatgttgcataggaaaag |
34253627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 317 - 612
Target Start/End: Complemental strand, 26633935 - 26633640
Alignment:
| Q |
317 |
actcaccttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatgaaaaggaccaatttcctcagcctcaccataagcaataga |
416 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26633935 |
actcaccttgattccaataataaggattaaaatgaaggtttttgccatctgaattaatatgaaaaggaccaatttcctcagcttcaccataagcaataga |
26633836 |
T |
|
| Q |
417 |
tgaacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatctatatgatctgcttcaatgaaccagtaaaatagtgtcctaccaaca |
516 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| || |||||||||||||||| |||||| |||| ||||||||||||||| | |||||||| || |
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| T |
26633835 |
agaacaaccaggaccaccattgagccacaaaagaagtggctttgaagtaggatctacatgatcagcttgaatgaaccagtaaaacaagttcctaccagca |
26633736 |
T |
|
| Q |
517 |
tccttgttaactgtaatataaccagaatagtgttcaaagttgatgttgaagttttgacctgggagtgctgttccaatcctgtcttgctcttgttgg |
612 |
Q |
| |
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|||| || ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||| || ||||||||| |
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| T |
26633735 |
tcctcattcactgttatataaccagaatagtgttcaaagctgatgttgaagttttgacctgggagtggtctatcaatcctgtcatgttcttgttgg |
26633640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 319 - 585
Target Start/End: Complemental strand, 26641398 - 26641132
Alignment:
| Q |
319 |
tcaccttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatgaaaaggaccaatttcctcagcctcaccataagcaatagatg |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
26641398 |
tcaccttgattccaagaataaggattaaaatgaaggtttttgccatctgaattaatatgaaaaggaccaatttcctcagcttcaccataagcaatagaag |
26641299 |
T |
|
| Q |
419 |
aacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatctatatgatctgcttcaatgaaccagtaaaatagtgtcctaccaacatc |
518 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || || ||||||||||||| |||||| |||| ||||||||||||||| | ||||||||||||| |
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|
| T |
26641298 |
aacaaccaggaccaccattgaaccacaaaagaagtggcttagaagtaggatctacatgatcagcttgaatgaaccagtaaaacaagttcctaccaacatc |
26641199 |
T |
|
| Q |
519 |
cttgttaactgtaatataaccagaatagtgttcaaagttgatgttgaagttttgacctgggagtgct |
585 |
Q |
| |
|
|| || ||||| ||||||||||| || ||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
26641198 |
ctcattcactgttatataaccagagtaatgttcaaagctgatgttgaagttttgacctggaagtgct |
26641132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 285 - 612
Target Start/End: Complemental strand, 26626412 - 26626079
Alignment:
| Q |
285 |
catacattttttgaatggttaaacaaaaaaccactc------accttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatga |
378 |
Q |
| |
|
||||||||||| ||| ||||||||||| || ||||| |||||||||||| ||||| |||||||||| ||||| ||| ||| |||||||||||| |
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| T |
26626412 |
catacatttttggaaaggttaaacaaagaatcactctaaatcaccttgattccaagaatatggattaagatagagggttttggaatcagaattaatatga |
26626313 |
T |
|
| Q |
379 |
aaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatctatatgat |
478 |
Q |
| |
|
||||| |||||||| ||||| |||||| |||||||||| |||||||||||||||||||||| ||| |||||||| || ||||||||||||||| ||||| |
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| T |
26626312 |
aaagggccaatttcttcagcttcaccaaaagcaatagaagaacaaccaggaccaccattgagccacaaaagaagtggcattgaagtaggatctacatgat |
26626213 |
T |
|
| Q |
479 |
ctgcttcaatgaaccagtaaaatagtgtcctaccaacatccttgttaactgtaatataaccagaatagtgttcaaagttgatgttgaagttttgacctgg |
578 |
Q |
| |
|
| |||| ||||||||||||||| | |||||||| |||||| || ||||| ||||||||||| || ||||||||| |||||||||||||||||||||| |
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|
| T |
26626212 |
cagcttgaatgaaccagtaaaacaagttcctaccagcatcctcattcactgttatataaccagagtaatgttcaaagctgatgttgaagttttgacctgg |
26626113 |
T |
|
| Q |
579 |
gagtgctgttccaatcctgtcttgctcttgttgg |
612 |
Q |
| |
|
||||| | | ||||||||||||| ||||||||| |
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|
| T |
26626112 |
gagtggtctatcaatcctgtcttgttcttgttgg |
26626079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 26634250 - 26634173
Alignment:
| Q |
136 |
cttacctgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacaggaga |
213 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
26634250 |
cttacctgtcctcttatcgccattgttgagaatgtcagatgaattctttgaatatgaaaatccaactccaacaggaga |
26634173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 26626696 - 26626596
Alignment:
| Q |
137 |
ttacctgtcctcttatctccattgttgagaatatcagaagaagcatttgaatatgaaaatccaactccaacaggagaatcaataagaagaacgttggcaa |
236 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| ||||| ||| |||||||| |||||||||||||| ||||| || |||||| ||||| |||||||| |
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|
| T |
26626696 |
ttacctgtcctcttatcgccattggtgagaatgtcagatgaattctttgaataggaaaatccaactccgacaggcgagtcaatataaagaatgttggcaa |
26626597 |
T |
|
| Q |
237 |
c |
237 |
Q |
| |
|
| |
|
|
| T |
26626596 |
c |
26626596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 26641723 - 26641616
Alignment:
| Q |
136 |
cttacctgtcctcttatctccattgttgagaatatcagaagaagcatt------tgaatatgaaaatccaactccaacaggagaatcaataagaagaacg |
229 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||| ||| | ||| |||||||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
26641723 |
cttacctgtcctcttatcgccattgttgagaatgtcatcagatgaattctttgttgaatatgaaaatccaactccaacaggagagtcaatataaagaata |
26641624 |
T |
|
| Q |
230 |
ttggcaac |
237 |
Q |
| |
|
|||||||| |
|
|
| T |
26641623 |
ttggcaac |
26641616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 3332917 - 3332885
Alignment:
| Q |
181 |
atttgaatatgaaaatccaactccaacaggaga |
213 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
3332917 |
atttgaataagaaaatccaactccaacaggaga |
3332885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 371 - 448
Target Start/End: Original strand, 42981823 - 42981900
Alignment:
| Q |
371 |
taatatgaaaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaa |
448 |
Q |
| |
|
||||| |||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| | |||||||| |
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|
| T |
42981823 |
taatacgaaaaggaccaatttcttcagaagcaccataagcaatagaagaacaaccaggaccaccattaagccataaaa |
42981900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 448
Target Start/End: Original strand, 42975932 - 42976003
Alignment:
| Q |
377 |
gaaaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaa |
448 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||| || |||||||||||||||||||| | |||||||| |
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|
| T |
42975932 |
gaaaaggaccaatttcttccgaagcaccataagcaatggaagaacaaccaggaccaccattaagccataaaa |
42976003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 470
Target Start/End: Original strand, 45130067 - 45130119
Alignment:
| Q |
418 |
gaacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatc |
470 |
Q |
| |
|
||||||||||| |||||||||| ||| | || |||||||||||||| |||||| |
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|
| T |
45130067 |
gaacaaccaggtccaccattgagccaaagaacaagaggttttgaagaaggatc |
45130119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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