View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_58 (Length: 225)
Name: NF20963_low_58
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 1200055 - 1200249
Alignment:
| Q |
17 |
aagaagcggaatgtgccgtaagaatgccgaaatagcaaatgcaaatgctgttaaagaag---aagaagacattttccacaccaagatccctgaaccagtg |
113 |
Q |
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| T |
1200055 |
aagaagcggaatgtgccttaagaatgccgaaatagcaaatgcaaatgctgttaaagaagcagaagaagacatattccacaccaagatccctgaaccagtg |
1200154 |
T |
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| Q |
114 |
ataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaa |
208 |
Q |
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| T |
1200155 |
ataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggactttcctcaccaa |
1200249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 1213484 - 1213578
Alignment:
| Q |
114 |
ataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaa |
208 |
Q |
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| T |
1213484 |
ataactcacattctctcttttctcccaaccaaagacgctgttcgcacttctatcttatctaagagttgggaacaccgctggacttcactcaccaa |
1213578 |
T |
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Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 579952 - 580050
Alignment:
| Q |
102 |
cctgaaccagtgataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcc |
200 |
Q |
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| T |
579952 |
cctgaaccagtgataactcacattctcagtttcgtaccaaccaaagatgctattcgcacctccatcttatccaaaaaatgggaacgtcgttggacttcc |
580050 |
T |
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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 1079027 - 1079121
Alignment:
| Q |
114 |
ataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaa |
208 |
Q |
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| T |
1079027 |
ataactcacatcatctcttttctcccaaccaaagatgccgttcgcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaa |
1079121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 5132779 - 5132685
Alignment:
| Q |
114 |
ataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatccaaaacatgggaacaccgttggacttcccttaccaa |
208 |
Q |
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| T |
5132779 |
ataactcacatcatctcttttctcccaaccaaagatgccgttcgcacttgtgtcttatctaaacaatggaaacaccgttggactttccttaccaa |
5132685 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 8193444 - 8193317
Alignment:
| Q |
75 |
gaagaagacattttccacaccaagatccctgaaccagtgataactcacattctctctttccttccaaccaaagacgcagttcgcacttctgtcttatcca |
174 |
Q |
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| T |
8193444 |
gaagatgacatattctacaacaagctccctgaacaactaataactcacattctctcttttcttccgacggaagatgctgttcgtgcttttcttttatcca |
8193345 |
T |
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| Q |
175 |
aaacatgggaacaccgttggacttccct |
202 |
Q |
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| T |
8193344 |
aaaaatggaaaacccgttggtcttccct |
8193317 |
T |
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