View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20963_low_8 (Length: 523)

Name: NF20963_low_8
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20963_low_8
NF20963_low_8
[»] chr2 (3 HSPs)
chr2 (6-265)||(37489177-37489436)
chr2 (324-507)||(37489434-37489617)
chr2 (31-83)||(15915585-15915637)
[»] chr5 (3 HSPs)
chr5 (31-298)||(32716612-32716881)
chr5 (337-387)||(32716524-32716575)
chr5 (474-507)||(32716445-32716478)
[»] chr7 (4 HSPs)
chr7 (31-150)||(33781623-33781742)
chr7 (237-347)||(46887334-46887445)
chr7 (22-77)||(30401451-30401506)
chr7 (449-507)||(46886443-46886501)
[»] chr1 (2 HSPs)
chr1 (31-139)||(35996164-35996272)
chr1 (41-137)||(25446992-25447088)
[»] chr4 (2 HSPs)
chr4 (22-119)||(13921848-13921945)
chr4 (22-102)||(13922519-13922599)
[»] chr3 (2 HSPs)
chr3 (38-102)||(50362907-50362971)
chr3 (95-138)||(10703382-10703425)
[»] scaffold2136 (1 HSPs)
scaffold2136 (31-119)||(595-683)
[»] chr8 (3 HSPs)
chr8 (22-104)||(19475119-19475201)
chr8 (22-104)||(19546044-19546126)
chr8 (22-104)||(19586570-19586652)
[»] chr6 (2 HSPs)
chr6 (22-116)||(15882165-15882259)
chr6 (41-102)||(15882826-15882887)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 37489177 - 37489436
Alignment:
Q  6 agtcagatactttgtaaccagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaag 105  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37489177 agtcagatcctttgtaaccaagtgcaagtctaataacttacaccaaatcttaagcattaaattaacttaatccaatggcttccatctatcaaattaaaag 37489276  T
Q  106 gaatcaaaagtgagacgcatacaattccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattgctttcgatttcaatgcttata 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37489277 gaatcaaaagtgagacgcatacaattccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattgctttcgatttcaatgcgtata 37489376  T
Q  206 tttcatcgacgagtagagatcaaagtgatgtttctccattgattgcagaccttacttttg 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37489377 tttcatcgacgagtagagatcaaagtgatgtttctccattgattgcagaccttacttttg 37489436  T

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Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 324 - 507
Target Start/End: Original strand, 37489434 - 37489617
Alignment:
Q  324 ttgagaagattaataaattaaaattaacgtaaattggaatataaaattgaagctttcaattaagaccaatgataaccataaatagcaaacacccaatttg 423  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37489434 ttgagaagattaataaattaaaattaacgtgaattagaatataaaattgaagctttcaattaagaccaatgataaccataaatagcaaacacccaatttg 37489533  T
Q  424 ggtgacccaaatttacaatacccatacatggttttcgattaagaaattgaaattacttttgattaatgaaactggaatcaatac 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37489534 ggtgacccaaatttacaatacccatacatggttttcgattaagaaattgaaattacttttgattaatgaaactggaatcaatac 37489617  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 15915585 - 15915637
Alignment:
Q  31 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatgg 83  Q
    ||||||||||||||||| ||||| |||| | ||||||||| |||||| |||||    
T  15915585 aagtctaataacttacatcaaattttaatcgttaaattaaattaatctaatgg 15915637  T

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Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 31 - 298
Target Start/End: Complemental strand, 32716881 - 32716612
Alignment:
Q  31 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 130  Q
    |||| |||| |||||||||||||||||| | | |||||||||||||||||||||||||||  |||||||||||||||||| || ||||||| | ||||||    
T  32716881 aagtataatgacttacaccaaatcttaaccgtaaaattaacttaatccaatggcttccataaatcaaattaaaaggaatctaatgtgagacacgtacaat 32716782  T
Q  131 tccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattgctttcgatttcaatgcttata--tttcatcgacgagtagagatcaa 228  Q
    ||||| || ||| |||||||||||| | |||||||| ||||||||||||||||||||  |||||   ||| ||||  | |||||||   || ||||||||    
T  32716781 tccctttctcttttcttgtcccaacgtctgcttgaaatcattctttctaaattgcttcagatttatttgcatatatctctcatcgatctgttgagatcaa 32716682  T
Q  229 agtgatgtttctccattgattgcagaccttacttttgcaagaacagaaaacagccaaaacggtgggtgga 298  Q
    |||| || ||||||||||||||    |||| |||||||||||||| |||||||||||| |||||||||||    
T  32716681 agtggtgcttctccattgattgtgcgccttgcttttgcaagaacacaaaacagccaaagcggtgggtgga 32716612  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 32716575 - 32716524
Alignment:
Q  337 taaattaaaattaacgtaaattggaatataaaa-ttgaagctttcaattaag 387  Q
    ||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||    
T  32716575 taaattaaaataaacgtgaattgaaatataaaaattgaagctttcaattaag 32716524  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 507
Target Start/End: Complemental strand, 32716478 - 32716445
Alignment:
Q  474 aattacttttgattaatgaaactggaatcaatac 507  Q
    ||||||||||||||||||||| ||||||||||||    
T  32716478 aattacttttgattaatgaaattggaatcaatac 32716445  T

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Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 31 - 150
Target Start/End: Original strand, 33781623 - 33781742
Alignment:
Q  31 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 130  Q
    ||||||||| |||||||||||||||||  | | || || |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||    
T  33781623 aagtctaatgacttacaccaaatcttatccgtcaattttacttaatccaatggcttccatctatcaaattaaaagaagtcaaaagtgagacacatacgat 33781722  T
Q  131 tccctctcccttctcttgtc 150  Q
    ||||||||||||||||||||    
T  33781723 tccctctcccttctcttgtc 33781742  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 347
Target Start/End: Complemental strand, 46887445 - 46887334
Alignment:
Q  237 ttctccattgattgcaga-ccttacttttgcaagaacagaaaacagccaaaacggtgggtgga-caaacaaaaataaagggacttacaattgagaagatt 334  Q
    |||||||||||||| ||| |||||||||||||||||| | ||||| ||||| |||||||||||  ||||| || | || |||||| ||||||||||||||    
T  46887445 ttctccattgattg-agagccttacttttgcaagaacgggaaacaaccaaaccggtgggtggatgaaacataattgaaaggacttgcaattgagaagatt 46887347  T
Q  335 aataaattaaaat 347  Q
    ||| |||||||||    
T  46887346 aatgaattaaaat 46887334  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 30401506 - 30401451
Alignment:
Q  22 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatc 77  Q
    |||||||||||||||||||| ||||||||||||| || ||||||| ||| ||||||    
T  30401506 accagatgcaagtctaataaattacaccaaatctcaaccattaaactaaattaatc 30401451  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 507
Target Start/End: Complemental strand, 46886501 - 46886443
Alignment:
Q  449 acatggttttcgattaagaaattgaaattacttttgattaatgaaactggaatcaatac 507  Q
    ||||||||||| ||||||||||| |||| |||||||||||||| || || |||||||||    
T  46886501 acatggttttcaattaagaaattaaaatcacttttgattaatgtaattgaaatcaatac 46886443  T

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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 35996164 - 35996272
Alignment:
Q  31 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 130  Q
    |||||||| ||| ||||||||||||||  |||||||||||  |||||||| | |||  || |  ||||||||||||||||||||||||||| ||| ||||    
T  35996164 aagtctaacaacctacaccaaatcttagccattaaattaaactaatccaacgacttatatttgacaaattaaaaggaatcaaaagtgagacacatgcaat 35996263  T
Q  131 tccctctcc 139  Q
    |||||||||    
T  35996264 tccctctcc 35996272  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 25447088 - 25446992
Alignment:
Q  41 acttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaattccctct 137  Q
    ||||||||||||||| || || |||||||| |||||| ||||||| | || |||||||||||||   ||| |||||||||| ||||||||| |||||    
T  25447088 acttacaccaaatctcaaccactaaattaaattaatctaatggctcctatttatcaaattaaaaaacatctaaagtgagacacatacaatttcctct 25446992  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 13921848 - 13921945
Alignment:
Q  22 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgag 119  Q
    |||||||| ||||||||| || |||||||||||| || |||||| |||| |||||| |||||||  ||| | |||||||||| | || ||||||||||    
T  13921848 accagatgtaagtctaatgacatacaccaaatctcaaccattaatttaaattaatctaatggctctcatatgtcaaattaaaggaaaccaaaagtgag 13921945  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 13922599 - 13922519
Alignment:
Q  22 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 102  Q
    |||||||  ||||||||| ||||||||||||||| || |||||| |||| |||||| |||||||  ||| |||||||||||    
T  13922599 accagatctaagtctaatgacttacaccaaatctcaaccattaatttaaattaatctaatggctctcatatatcaaattaa 13922519  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 50362971 - 50362907
Alignment:
Q  38 ataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 102  Q
    |||||||| ||||||||| || ||||||||||| ||||| ||||||||| ||| |||||||||||    
T  50362971 ataacttataccaaatctcaaccattaaattaaattaattcaatggctttcatatatcaaattaa 50362907  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 10703425 - 10703382
Alignment:
Q  95 caaattaaaaggaatcaaaagtgagacgcatacaattccctctc 138  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||    
T  10703425 caaattaaaagaaatcaaaagcgagacacatacaattccctctc 10703382  T

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Target: scaffold2136 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold2136
Description:

Target: scaffold2136; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 683 - 595
Alignment:
Q  31 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgag 119  Q
    ||||||||||||||||||||||||||||   ||||||||| |||||| ||| | | || |  ||||||||||| | || ||||||||||    
T  683 aagtctaataacttacaccaaatcttaactgttaaattaaattaatctaatagatcccctacatcaaattaaaggaaaccaaaagtgag 595  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 19475201 - 19475119
Alignment:
Q  22 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 104  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19475201 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19475119  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 19546126 - 19546044
Alignment:
Q  22 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 104  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19546126 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19546044  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 19586570 - 19586652
Alignment:
Q  22 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 104  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19586570 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19586652  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 15882165 - 15882259
Alignment:
Q  22 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagt 116  Q
    ||||| || ||||||||| || |||||||||||| || |||||| |||| |||||| |||||||  ||| | ||||||||||   ||||||||||    
T  15882165 accaggtgtaagtctaatgacatacaccaaatctcaaccattaatttaaattaatctaatggctctcatatgtcaaattaaagaaaatcaaaagt 15882259  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 15882887 - 15882826
Alignment:
Q  41 acttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 102  Q
    ||||||||||||||| || |||||| |||| |||||| |||||||  ||| |||||||||||    
T  15882887 acttacaccaaatctcaaccattaatttaaattaatctaatggctctcatatatcaaattaa 15882826  T

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