View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_9 (Length: 514)
Name: NF20963_low_9
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 196 - 505
Target Start/End: Original strand, 36945922 - 36946236
Alignment:
| Q |
196 |
aggaagacttttcttaagatgaatggataatttgtggcaatgtaactt------cgtgtgataatatttctagcaccttatttctgaacacaggtctgaa |
289 |
Q |
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| T |
36945922 |
aggaagatttttcttaagatcgatagataatttgtagctatgtaactttgcaatcgtgtgataatatttctcgagctttatttctgaacacaggtcagaa |
36946021 |
T |
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| Q |
290 |
ctatgcaatcctaaggcatctgcaacaccacttacttatgttgacactgaggacatctgtggaaggcctttgggactcagactttgacaagaaaactggt |
389 |
Q |
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| T |
36946022 |
ctatgcaatctaaaggcatctgcaacaccacttagttatgttgaaactgaggacatctgtggaaggcctttgggactcaga-tttgacaagaaaactggt |
36946120 |
T |
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| Q |
390 |
gatttatacattgcagatgcatattttgggctgatgaaggtggggcctcaaggtggtttcataacatctcttgcaaccgaggcagaaggagtaccgttta |
489 |
Q |
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| T |
36946121 |
gatttatacatagcagatgcatatttcgggcttatgaaggtggggcctcaaggtggtttcgcaacatctcttgcaaccgaagcagaaggagtaccattta |
36946220 |
T |
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| Q |
490 |
gatttactgatgatgt |
505 |
Q |
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| T |
36946221 |
gatttactaatgatgt |
36946236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 36945732 - 36945563
Alignment:
| Q |
1 |
tttagccacatttattc-atactaataagcttgaactactagaatatgactatagcttatgaatttgataactatcggcaatattctagtaatgcagaaa |
99 |
Q |
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| T |
36945732 |
tttagccacatttatcccatactaataagcttgcactattagagtatgactacagcttatgaatttgataactattgacagtattctagtaatgcagaaa |
36945633 |
T |
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| Q |
100 |
gataacaaaatcacaaagttatcttgtactaagcatttaagttggaaaagttataaggaaagaagagaag |
169 |
Q |
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| T |
36945632 |
gataacacaatgacaaaattatcttgcactaagcatttaggttggaaaagttataaggaaagaagagaag |
36945563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 36945867 - 36945922
Alignment:
| Q |
170 |
tgtgaaattctgctacattgcatctgaggaagacttttcttaagatgaatggataa |
225 |
Q |
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| T |
36945867 |
tgtgaaagtctgctacattgcatccggggaagatttttcttaagatgaatagataa |
36945922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 314 - 478
Target Start/End: Complemental strand, 17768993 - 17768830
Alignment:
| Q |
314 |
acaccacttacttatgttgacactgaggacatctgtggaaggcctttgggactcagactttgacaagaaaactggtgatttatacattgcagatgcatat |
413 |
Q |
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| T |
17768993 |
acaccatttagttatgtgaagactgagcacatatgtggaaggcctttgggactcaga-ttcgacaagaaaacaggtgaattgtacattgcagatgcatat |
17768895 |
T |
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| Q |
414 |
tttgggctgatgaaggtggggcctcaaggtggtttcataacatctcttgcaaccgaggcagaagg |
478 |
Q |
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| T |
17768894 |
cttgggctgttgaaggtggggcccgagggaggtttagcaacatctcttgcaactgaggctgaagg |
17768830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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