View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20964_high_1 (Length: 620)
Name: NF20964_high_1
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_high_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 14 - 600
Target Start/End: Complemental strand, 39575138 - 39574552
Alignment:
| Q |
14 |
gaagcgtgccaggttcgggtcaaggacgtcatgaatttcaaactgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgcata |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39575138 |
gaagcgtgccaggttcaggtcaaggacgtcatgaatttcaaactgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgcata |
39575039 |
T |
|
| Q |
114 |
ttgtgatgaaaggtgtgagatgatacttgtttacgagtacatggaaaatgggacacttagagagaatttgtacaatacaaatttgccttgtttgacttgg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39575038 |
ttgtgatgaaaggtgtgagatgatacttgtttacgagtacatggaaaatgggacacttagagataatttgtacgatacaaatttgccttgtttgacttgg |
39574939 |
T |
|
| Q |
214 |
aagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagccggtggaataatccaccgtgatgtgaaatccacta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39574938 |
aagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagccggtggaataatccaccgtgatgtgaaatccacta |
39574839 |
T |
|
| Q |
314 |
atatattgcttgacaagaatcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatcaacattcttatgtcagcacatgtgttaa |
413 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39574838 |
atatattgcttgacgagaatcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatcaacattcttatgtcagcacatgtgttaa |
39574739 |
T |
|
| Q |
414 |
agggacttttgggtatcttgatccggattactttagatcacaacagcttacagaaaaatccgatgtttactcttttggggtggttctacttgaagtgttg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39574738 |
agggacttttgggtatcttgatccggattactttagatcacaacagcttacagaaaaatccgatgtttactcttttggggtggttctacttgaagtgttg |
39574639 |
T |
|
| Q |
514 |
tgcgcaagaccagccatcgaactgtcttgtccaagtgagcaagtcaatttggctgagtggggattgcattgcaaagacaaagggata |
600 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39574638 |
tgcgcaagaccagccatagaactgtcttgtccaagtgagcaagtcaatttggctgagtggggattgcattgcaaagacaaagggata |
39574552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 14 - 600
Target Start/End: Complemental strand, 39543303 - 39542717
Alignment:
| Q |
14 |
gaagcgtgccaggttcgggtcaaggacgtcatgaatttcaaactgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgcata |
113 |
Q |
| |
|
|||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| | || |
|
|
| T |
39543303 |
gaagtgtgccgggttcaggtcaaggacaacatgaatttcaaactgagataatggttctgtccaagattcgtcacaaacaccttgtttccttaatagggta |
39543204 |
T |
|
| Q |
114 |
ttgtgatgaaaggtgtgagatgatacttgtttacgagtacatggaaaatgggacacttagagagaatttgtacaatacaaatttgccttgtttgacttgg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39543203 |
ttgtgatgaaaggtgtgagatgatacttgtttatgagtacatggaaaatggtacacttagggagaatttatacaatacaaatttgccttgtttgacttgg |
39543104 |
T |
|
| Q |
214 |
aagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagccggtggaataatccaccgtgatgtgaaatccacta |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
39543103 |
aagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagctggtggaataattcaccgtgacgtgaaatccacta |
39543004 |
T |
|
| Q |
314 |
atatattgcttgacaagaatcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatcaacattcttatgtcagcacatgtgttaa |
413 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
39543003 |
atatattgcttgatgagaatcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatgaacattcttatgtcagcacacgtgttaa |
39542904 |
T |
|
| Q |
414 |
agggacttttgggtatcttgatccggattactttagatcacaacagcttacagaaaaatccgatgtttactcttttggggtggttctacttgaagtgttg |
513 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
39542903 |
agggacttttgggtatcttgatcctgattactttagagcacaacagcttacagaaaaatctgatgtttattcttttggggtggttctacttgaggtgttg |
39542804 |
T |
|
| Q |
514 |
tgcgcaagaccagccatcgaactgtcttgtccaagtgagcaagtcaatttggctgagtggggattgcattgcaaagacaaagggata |
600 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
39542803 |
tgcgcaagaccagccatcgaattgtcttgtccaagtgagcaaataaatttggctgagtggggattgttttgcaaaaacaaagggata |
39542717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 14 - 598
Target Start/End: Complemental strand, 39579674 - 39579087
Alignment:
| Q |
14 |
gaagcgtgccaggttcgggtcaaggacgtcatgaatttcaaactgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgcata |
113 |
Q |
| |
|
|||| ||||| || || |||||||||| || ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39579674 |
gaagggtgccggggtcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggta |
39579575 |
T |
|
| Q |
114 |
ttgtgatgaaaggtgtgagatgatacttgtttacgagtacatggaaaatgggacacttagagagaatttgtacaatacaaatttgccttgttt---gact |
210 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| || || |||||||| |||||||||| ||||||||||||||||| || ||||||| |||| |||| |
|
|
| T |
39579574 |
ttgtgatgaagggtatgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgact |
39579475 |
T |
|
| Q |
211 |
tggaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagccggtggaataatccaccgtgatgtgaaatcca |
310 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
39579474 |
tggaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagttgctggtggaataatccaccgtgatgtgaaatcca |
39579375 |
T |
|
| Q |
311 |
ctaatatattgcttgacaagaatcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatcaacattcttatgtcagcacatgtgt |
410 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
39579374 |
ctaatatattgcttgatgagaatcttgttgctaaagttgctgattttggcctttcaaaggcaggtcctcttgatcaacattcttatgtgagcacaggtgt |
39579275 |
T |
|
| Q |
411 |
taaagggacttttgggtatcttgatccggattactttagatcacaacagcttacagaaaaatccgatgtttactcttttggggtggttctacttgaagtg |
510 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39579274 |
taaagggacttttgggtatcttgatcctgattactttagatcactacaccttacagaaaaatccgatgtttattcttttggggtggttctacttgaagtg |
39579175 |
T |
|
| Q |
511 |
ttgtgcgcaagaccagccatcgaactgtcttgtccaagtgagcaagtcaatttggctgagtggggattgcattgcaaagacaaaggga |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39579174 |
ttgtgcgcaagaccagccatcgaactgtcttgtccaagtgagcaagtcaatttggctgagtggggattgctttgcaaagacaaaggga |
39579087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 600
Target Start/End: Complemental strand, 39510234 - 39509652
Alignment:
| Q |
21 |
gccaggttcgggtcaaggacgtcatgaatttcaaactgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgcatattgtgat |
120 |
Q |
| |
|
|||||| || |||||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
39510234 |
gccagggtcaggtcaaggactacctgaatttcagactgagataatggttttgtcaaagattcgtcatcgacaccttgtttccttaattgggtattgtgat |
39510135 |
T |
|
| Q |
121 |
gaaaggtgtgagatgatacttgtttacgagtacatggaaaatgggacacttagagagaatttgtacaatacaaatttgccttgttt---gacttggaagc |
217 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||| |||||||||| ||| | |||||| | ||||||||||| |||| ||||||||||| |
|
|
| T |
39510134 |
gaaaggtatgagatgatacttgtttatgagtacatggaaaaggggacacttaaagaaagtttgtaaggtgcaaatttgcctagtttcttgacttggaagc |
39510035 |
T |
|
| Q |
218 |
aaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagccggtggaataatccaccgtgatgtgaaatccactaatat |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||| |||||||| |||||||| || |
|
|
| T |
39510034 |
aaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagcagctggtggaatcattcaccgcgatgtgaagtccactaacat |
39509935 |
T |
|
| Q |
318 |
attgcttgacaagaatcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatcaacattcttatgtcagcacatgtgttaaaggg |
417 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||| || |
|
|
| T |
39509934 |
attgcttgatgagcatcttgtagctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcagcacaggtgttaaggga |
39509835 |
T |
|
| Q |
418 |
acttttgggtatcttgatccggattactttagatcacaacagcttacagaaaaatccgatgtttactcttttggggtggttctacttgaagtgttgtgcg |
517 |
Q |
| |
|
||||| || ||||| ||||| || |||||||||||||||||||||||||||||||| ||||| || || || || ||||||||||||||||| || || | |
|
|
| T |
39509834 |
actttcggttatctcgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggcgtggttctacttgaagtattatgtg |
39509735 |
T |
|
| Q |
518 |
caagaccagccatcgaactgtcttgtccaagtgagcaagtcaatttggctgagtggggattgcattgcaaagacaaagggata |
600 |
Q |
| |
|
||||| ||||||| |||| ||| |||||| || ||||| || || ||| |||||||| | ||||||||||||||||||| |
|
|
| T |
39509734 |
caagaacagccattgaaccgtcacttccaagggaacaagtgaacttagctcagtggggaattttttgcaaagacaaagggata |
39509652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 45 - 173
Target Start/End: Complemental strand, 39520468 - 39520340
Alignment:
| Q |
45 |
tgaatttcaaactgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgcatattgtgatgaaaggtgtgagatgatacttgtt |
144 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
39520468 |
tgaatttcagactgagataatggttttgtccaagattcgtcatcggcatcttgtttccttaattgggtattgtgatgaaaggtatgagatgatacttgtt |
39520369 |
T |
|
| Q |
145 |
tacgagtacatggaaaatgggacacttag |
173 |
Q |
| |
|
|| |||||||||||||| ||||||||||| |
|
|
| T |
39520368 |
tatgagtacatggaaaaggggacacttag |
39520340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 46271665 - 46271722
Alignment:
| Q |
211 |
tggaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcaca |
268 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| ||||||| || || ||||||| |
|
|
| T |
46271665 |
tggaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcaca |
46271722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 35904726 - 35904669
Alignment:
| Q |
211 |
tggaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcaca |
268 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35904726 |
tggaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca |
35904669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 27539427 - 27539484
Alignment:
| Q |
211 |
tggaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcaca |
268 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| ||||||| || || ||||||| |
|
|
| T |
27539427 |
tggaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcaca |
27539484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 41044341 - 41044293
Alignment:
| Q |
220 |
aggcttgagatttgcattggtgctgctagaggtcttcattaccttcaca |
268 |
Q |
| |
|
||||||||||| |||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
41044341 |
aggcttgagatatgcattggatctgctaaaggacttcattaccttcaca |
41044293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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