View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20964_high_13 (Length: 318)

Name: NF20964_high_13
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20964_high_13
NF20964_high_13
[»] chr5 (1 HSPs)
chr5 (18-309)||(34694466-34694757)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 34694466 - 34694757
Alignment:
Q  18 ataataagattattgaaatccgcgttatgtgtcaccttgagtttacaaaatcaattcgattattcacgataataattctgacaaattcatgcaatatcaa 117  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34694466 ataataagattattgaaatccgcattatgtgtcaccttgattttacaaaatcaatttgattattcacgataataattctgacaaattcatgcaatatcaa 34694565  T
Q  118 tcatatttattnnnnnnnnngggaaattcaatttcctcaaactaaataataaaaggtaaatcacgtgtttgttttcttggatccaacgacccacatcaaa 217  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  34694566 tcatatttattaataaaaaagggaaattcaatttcctcaaactaaataataaaaggtaaatcacgtgtttgttttcttggacccaacgacccacaccaaa 34694665  T
Q  218 aggtcaaagcaaggaaacatacatgaaagtttgcacatggaactcaattcaatatacaaattcggaaatgttgaggtttcacctacctatgc 309  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34694666 aggccaaagcaaggaaacatacatgaaagtttgcacatggaactcaattcaatatacaaattcggaaatgttgaggtttcacctacctatgc 34694757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University