View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_high_18 (Length: 280)
Name: NF20964_high_18
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 38287485 - 38287745
Alignment:
| Q |
18 |
cacattcatgtcaggagaaaatatactcgtaaattaagaatgcaatannnnnnngtgttaaccctctggtttctcaggaaaaagaggttcggtcatcagg |
117 |
Q |
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| T |
38287485 |
cacattcatg-caggagaaaatatactcgtaaattaagaatgcaatatttttt-gtgttaaccctctggtttctcagaaaaaagaggttcggtcatcaga |
38287582 |
T |
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| Q |
118 |
caaggataatctaaccaataattgtttaacttaggaatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttgagttctat |
217 |
Q |
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| T |
38287583 |
caaggataatctaatcaataattgtttaacttaagaatcgaattcggattcttccaaacgattcgtcattgctgaaactcattaaccacttgagttctat |
38287682 |
T |
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| Q |
218 |
tgcttgattaggaatgcaaaatttgttactggaaaaaacgacttacatatt--cttggacatg |
278 |
Q |
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| T |
38287683 |
tgcttgattaggaatgcaaaatttgttactagaaaaaacgacttacatattaacttggacatg |
38287745 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 39844041 - 39843995
Alignment:
| Q |
165 |
attctttcgaacgattcgtctttgctgaaattcattaaccacttgag |
211 |
Q |
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| T |
39844041 |
attctttcgaatgattcgtctttggtgaagttcatttaccacttgag |
39843995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 13043501 - 13043549
Alignment:
| Q |
175 |
acgattcgtctttgctgaaattcattaaccacttgagttctattgcttg |
223 |
Q |
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| T |
13043501 |
acgattcgtccttgatgaaactcattaaccacttgagctcaattgcttg |
13043549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 34548585 - 34548528
Alignment:
| Q |
153 |
aatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttga |
210 |
Q |
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| T |
34548585 |
aatcgaattcgggttattccgaacgactcgtctttgatgaagttcattaatcacttga |
34548528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 24363853 - 24363805
Alignment:
| Q |
163 |
ggattctttcgaacgattcgtctttgctgaaattcattaaccacttgag |
211 |
Q |
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| T |
24363853 |
ggattcttccaaacgattcgtccttggtgaaattaattaaccacttgag |
24363805 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 8509732 - 8509644
Alignment:
| Q |
133 |
caataattgtttaacttaggaatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttgagttctattgct |
221 |
Q |
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| T |
8509732 |
caataattgttttatctaagaatcgaatttggattctcccaaacaattcatcattgatgaaactcattaactacttgagttcgattgct |
8509644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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