View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20964_high_2 (Length: 617)

Name: NF20964_high_2
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20964_high_2
NF20964_high_2
[»] chr4 (8 HSPs)
chr4 (276-599)||(24239903-24240226)
chr4 (11-217)||(24240285-24240493)
chr4 (427-592)||(16832207-16832375)
chr4 (427-599)||(19852366-19852544)
chr4 (427-599)||(16593829-16594007)
chr4 (509-599)||(37049967-37050061)
chr4 (498-540)||(12579947-12579989)
chr4 (427-475)||(37049921-37049969)
[»] chr8 (7 HSPs)
chr8 (427-599)||(8831282-8831460)
chr8 (495-599)||(27786847-27786954)
chr8 (495-599)||(36206480-36206587)
chr8 (433-555)||(399827-399952)
chr8 (509-599)||(29369070-29369163)
chr8 (427-599)||(28225773-28225954)
chr8 (433-472)||(36206598-36206637)
[»] chr6 (5 HSPs)
chr6 (427-595)||(10989909-10990080)
chr6 (439-599)||(4263429-4263592)
chr6 (509-598)||(25167810-25167902)
chr6 (427-473)||(29709111-29709157)
chr6 (427-475)||(25167764-25167812)
[»] chr1 (9 HSPs)
chr1 (437-599)||(17114774-17114942)
chr1 (495-599)||(41035085-41035192)
chr1 (491-599)||(19394187-19394298)
chr1 (503-595)||(50903546-50903641)
chr1 (426-475)||(13062113-13062162)
chr1 (513-595)||(13062026-13062111)
chr1 (502-599)||(49491940-49492039)
chr1 (493-535)||(39332281-39332323)
chr1 (547-599)||(3374311-3374363)
[»] chr3 (8 HSPs)
chr3 (499-599)||(51524824-51524927)
chr3 (489-592)||(26796887-26796993)
chr3 (498-599)||(16893033-16893137)
chr3 (489-592)||(31067122-31067228)
chr3 (427-475)||(35526716-35526764)
chr3 (509-599)||(35526621-35526718)
chr3 (491-540)||(21845013-21845062)
chr3 (440-473)||(31163129-31163162)
[»] chr2 (7 HSPs)
chr2 (503-599)||(14296318-14296417)
chr2 (499-599)||(18811765-18811868)
chr2 (509-599)||(31092283-31092376)
chr2 (509-599)||(37344586-37344679)
chr2 (495-599)||(18693057-18693161)
chr2 (548-599)||(8413877-8413928)
chr2 (427-475)||(37344540-37344588)
[»] chr5 (6 HSPs)
chr5 (490-593)||(15188014-15188117)
chr5 (501-599)||(36868251-36868352)
chr5 (509-599)||(19215349-19215442)
chr5 (497-555)||(37307274-37307332)
chr5 (509-592)||(788342-788428)
chr5 (427-464)||(788437-788474)
[»] chr7 (3 HSPs)
chr7 (501-599)||(26449596-26449697)
chr7 (491-593)||(33191227-33191332)
chr7 (547-599)||(19407903-19407955)
[»] scaffold0531 (1 HSPs)
scaffold0531 (511-599)||(10228-10319)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 276 - 599
Target Start/End: Complemental strand, 24240226 - 24239903
Alignment:
Q  276 acatgtttgacttgcttgcacaaattttttccaaacatgcatcttgactattgactaggtgaattagactattgacaactaggaatttagctttgagttg 375  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||     
T  24240226 acatgtttgacttgcttgcacaatttttttccaaacatgcatcttgactattgactaggtgaattagactattgacaactaggtaattagctttgagtta 24240127  T
Q  376 atttaggattagttatagtttnnnnnnnn--caagtattagttatgattaactgtgatggaggacactctcagccatgacaagagacttgaggtggaaga 473  Q
    |||||||||||||||||||||          |||||||||||||| || |||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  24240126 atttaggattagttatagtttaaaaaaaaaacaagtattagttataatcaactgtgatggaggacgctc--agccatgacaagagacttgaggtggaaga 24240029  T
Q  474 ctctgctcaagccaccatatcagactttgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaagaagtaggtgaataaagtgaag 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24240028 ctctgctcaagccaccatatcagactttgagcagcactatccaagtctatctgagagcactaaggcatcgagaaagaagaagtaggtgaataaagtgaag 24239929  T
Q  574 cctactagctttaactcagccggaat 599  Q
    ||||||||||||||||||||||||||    
T  24239928 cctactagctttaactcagccggaat 24239903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 24240493 - 24240285
Alignment:
Q  11 cacagactgaaccagtgattttgtatccttttgtgacccattgatttaagcattcattgagttcagcttcgttcctagcacaagtgtgtacagtggcccc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24240493 cacagactgaaccagtgattttgtatccttttgtgacccattgatttaagcattcattgagttcagcttcgttcctagcacaagtgtgtacagtggcccc 24240394  T
Q  111 tagctctgctaattgctccactatatcatatc--tagtcatagtttaattcacataaataatcagtgagaaaaatcatgattcataaatcttattaatat 208  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24240393 tagctctgctaattgctccactatatcatatctatagtcatagtttaattcacataaataatcagtgagaaaaatcatgattcataaatcttattaatat 24240294  T
Q  209 aagactatc 217  Q
    |||||||||    
T  24240293 aagactatc 24240285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 427 - 592
Target Start/End: Complemental strand, 16832375 - 16832207
Alignment:
Q  427 gtgatggaggacactctcagccatgacaagagacttgaggtggaagactctgctcaagccaccatatcagactttgagcagcactatccaagtctatctg 526  Q
    |||||| |||||||| ||||||||||||| ||||||||||||| | ||  |||  || |||||| |||||||||||||||||| | ||||| ||| |||     
T  16832375 gtgatgaaggacactttcagccatgacaaaagacttgaggtggcaaacaatgcaaaaaccaccacatcagactttgagcagcattgtccaactctttctt 16832276  T
Q  527 agagcactaaggcatagaga---aagaagaagtaggtgaataaagtgaagcctactagctttaactcag 592  Q
    |||| ||||||||| |||||   || |||||| | ||||| |||||||||||||||| |||||||||||    
T  16832275 agagaactaaggcagagagaaggaataagaagcatgtgaacaaagtgaagcctactaactttaactcag 16832207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 427 - 599
Target Start/End: Original strand, 19852366 - 19852544
Alignment:
Q  427 gtgatggaggacactctcagccatgacaagagacttgaggtggaaga---ctctgctcaagccaccatatcagactttgagcagcactatccaagtctat 523  Q
    ||||||||||||||| |||||  |||||||||| |||||| ||||||   |  || | |||||  |||||| ||||||||| | || |||||||||||||    
T  19852366 gtgatggaggacactatcagctctgacaagagaattgaggcggaagaggacaatgttgaagccctcatatctgactttgagaaacattatccaagtctat 19852465  T
Q  524 ctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    | ||||||||||||||| ||| |||||||||| ||   ||| | ||||||| |||| |||| ||||||||| |||||||    
T  19852466 cggagagcactaaggcagagaaaaagaagaagaagcacgtgcacaaagtgaggcctgctagttttaactcacccggaat 19852544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 427 - 599
Target Start/End: Complemental strand, 16594007 - 16593829
Alignment:
Q  427 gtgatggaggacactctcagccatgacaagagacttgaggtggaaga---ctctgctcaagccaccatatcagactttgagcagcactatccaagtctat 523  Q
    ||||||||||||||| |||||  |||||||||| |||||| ||||||   |  || | |||||  |||||| ||||||||| | || |||||||||||||    
T  16594007 gtgatggaggacactatcagcactgacaagagaattgaggcggaagaggacaatgttgaagccctcatatctgactttgagaaacattatccaagtctat 16593908  T
Q  524 ctgagagcactaaggcatagagaaaga---agaagtaggtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    | ||||||||||||||| ||| |||||   ||||| | ||| | ||||||| |||| |||| ||||||| |||||||||    
T  16593907 cggagagcactaaggcagagaaaaagaagtagaagcacgtgcacaaagtgaggcctgctagttttaacttagccggaat 16593829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 509 - 599
Target Start/End: Original strand, 37049967 - 37050061
Alignment:
Q  509 actatccaagtctatctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagccta-ctagctttaactcagccggaat 599  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||| |    ||||| ||||||||||||  |||| |||||||||||||||||    
T  37049967 actatccaagtctatctgaaagcactaaggcagagaaaaagaagaagaaacatgtgaacaaagtgaagcctttctagttttaactcagccggaat 37050061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 540
Target Start/End: Complemental strand, 12579989 - 12579947
Alignment:
Q  498 ctttgagcagcactatccaagtctatctgagagcactaaggca 540  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  12579989 ctttgagcagcactatccaagtctatcagagagcaataaggca 12579947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 37049921 - 37049969
Alignment:
Q  427 gtgatggaggacactctcagccatgacaagagacttgaggtggaagact 475  Q
    ||||||||||||||| ||| |||||||||||| |||||| |||||||||    
T  37049921 gtgatggaggacactttcaaccatgacaagaggcttgagatggaagact 37049969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 427 - 599
Target Start/End: Complemental strand, 8831460 - 8831282
Alignment:
Q  427 gtgatggaggacactctcagccatgacaagagacttgaggtggaaga---ctctgctcaagccaccatatcagactttgagcagcactatccaagtctat 523  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||   |  || | ||| |  |||||||||||||||||| || |||||||||||||    
T  8831460 gtgatggaggactctctcagccatgacaagagaattgaggtggaagaggacaatgttgaagacctcatatcagactttgagcaacattatccaagtctat 8831361  T
Q  524 ctgagagcactaaggcatagaga---aagaagaagtaggtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    ||||||||||||||||| ||| |   ||||||||| |  |||| ||||||| |||| ||||||||||||||||||||||    
T  8831360 ctgagagcactaaggcagagaaagagaagaagaagcacatgaacaaagtgaggcctgctagctttaactcagccggaat 8831282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 495 - 599
Target Start/End: Complemental strand, 27786954 - 27786847
Alignment:
Q  495 agactttgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaag---aagtaggtgaataaagtgaagcctactagctttaactca 591  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||   ||| || ||||||||||||||||| ||||||||||||||    
T  27786954 agactttgagcagcactatccaagtctatctgagagcaataaggcggagagaaagaagaataagcagatgaataaagtgaagccttctagctttaactca 27786855  T
Q  592 gccggaat 599  Q
    ||||||||    
T  27786854 gccggaat 27786847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 495 - 599
Target Start/End: Complemental strand, 36206587 - 36206480
Alignment:
Q  495 agactttgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaactca 591  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||| |||||||||||||| ||    ||||||||||||||||| |||||||||||| |    
T  36206587 agactttgagcaacactttccaagtctatctgagagcaccaaggcagagagaaagaagaagaagcaaatgaataaagtgaagccttctagctttaactta 36206488  T
Q  592 gccggaat 599  Q
    | ||||||    
T  36206487 gtcggaat 36206480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 433 - 555
Target Start/End: Complemental strand, 399952 - 399827
Alignment:
Q  433 gaggacactctcagccatgacaagagacttgaggtggaaga---ctctgctcaagccaccatatcagactttgagcagcactatccaagtctatctgaga 529  Q
    |||||||||||||||||||||||| ||||||| || |||||   |  || | ||||   ||||||| |||||||||| |||||||| ||| ||| |||||    
T  399952 gaggacactctcagccatgacaagcgacttgatgttgaagaggacaatgatgaagcactcatatcaaactttgagcaacactatccgagtttatatgaga 399853  T
Q  530 gcactaaggcatagagaaagaagaag 555  Q
    ||||||||||| ||||||||||||||    
T  399852 gcactaaggcagagagaaagaagaag 399827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 509 - 599
Target Start/End: Original strand, 29369070 - 29369163
Alignment:
Q  509 actatccaagtctatctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    ||||||||||||||||||||||||||||| || ||| |||||||||| ||   ||||||||||||| |||| | |||||||||| |||| ||||    
T  29369070 actatccaagtctatctgagagcactaagacaaagataaagaagaagaagcacgtgaataaagtgatgccttcaagctttaactgagccagaat 29369163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 599
Target Start/End: Complemental strand, 28225954 - 28225773
Alignment:
Q  427 gtgatggaggacactctcagcca---tgacaagagacttgaggtggaaga---ctctgctcaagccaccatatcagactttgagcagcactatccaagtc 520  Q
    |||| |||||||||||| |||||   |||||||||||||  |||||||||   |  || | |||||| ||| |||  |||||| || || ||||||||||    
T  28225954 gtgaaggaggacactctaagccaacatgacaagagacttacggtggaagaggacaatgttgaagccaacatttcatgctttgaacaacattatccaagtc 28225855  T
Q  521 tatctgagagcactaaggcatagag---aaagaagaagtaggtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    |||||||||||||||||| | ||||   |||||||||| | ||||  |||||||||  |  || ||||||||||||||||||    
T  28225854 tatctgagagcactaaggtagagagagaaaagaagaagcatgtgatcaaagtgaagtttgttaactttaactcagccggaat 28225773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 472
Target Start/End: Complemental strand, 36206637 - 36206598
Alignment:
Q  433 gaggacactctcagccatgacaagagacttgaggtggaag 472  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  36206637 gaggacactctcagccatgacgagagacttgagatggaag 36206598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 427 - 595
Target Start/End: Original strand, 10989909 - 10990080
Alignment:
Q  427 gtgatggaggacactctcagccatgacaagagacttgaggtggaagactctgctcaagccaccatatcagactttgagcagcactatccaagtctatctg 526  Q
    |||||||||||  |||||||||||| |||||||||||||||||| |||  || | | |||||| |||||||||||||||||||||||||| ||  |||||    
T  10989909 gtgatggaggaagctctcagccatggcaagagacttgaggtggatgaccatgttgatgccaccttatcagactttgagcagcactatccatgtaaatctg 10990008  T
Q  527 agagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaactcagccg 595  Q
    ||||||||||||||  ||||||||||||| ||   | ||| |||||||| ||| |||||||||||| |||||    
T  10990009 agagcactaaggcagcgagaaagaagaagcagcaagagaacaaagtgaatccttctagctttaacttagccg 10990080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 439 - 599
Target Start/End: Complemental strand, 4263592 - 4263429
Alignment:
Q  439 actctcagccatgacaagagacttgaggtggaaga---ctctgctcaagccaccatatcagactttgagcagcactatccaagtctatctgagagcacta 535  Q
    |||||||||||||||||||| | ||| ||||||||   |  || | | |||| | ||||||||||||||| |||||||||||  || ||| |||||||||    
T  4263592 actctcagccatgacaagagtcctgaagtggaagaggacggtgttgatgccatcgtatcagactttgagcggcactatccaaacctttctaagagcacta 4263493  T
Q  536 aggcatagagaaagaagaagtaggtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    ||||| ||| |||||||||| | || || ||| |||||||| |||| |||||||||||||||||    
T  4263492 aggcagagaaaaagaagaagcatgtaaacaaaatgaagcctgctagttttaactcagccggaat 4263429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 509 - 598
Target Start/End: Original strand, 25167810 - 25167902
Alignment:
Q  509 actatccaagtctatctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaactcagccggaa 598  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||| |    ||||| |||||||||||| |||| ||||||||||||||||    
T  25167810 actatccaagtctatctgaaagcactaaggcagagagaaagaagaagaaacatgtgaacaaagtgaagccttctagttttaactcagccggaa 25167902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 473
Target Start/End: Original strand, 29709111 - 29709157
Alignment:
Q  427 gtgatggaggacactctcagccatgacaagagacttgaggtggaaga 473  Q
    ||||||||||| ||||||||||||||||||||||  ||| |||||||    
T  29709111 gtgatggaggaaactctcagccatgacaagagaccggagatggaaga 29709157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 25167764 - 25167812
Alignment:
Q  427 gtgatggaggacactctcagccatgacaagagacttgaggtggaagact 475  Q
    ||||||||||||||| ||| |||||||||| | |||||| |||||||||    
T  25167764 gtgatggaggacactttcaaccatgacaagtggcttgagatggaagact 25167812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 437 - 599
Target Start/End: Complemental strand, 17114942 - 17114774
Alignment:
Q  437 acactctcagccatgacaagagacttgaggtggaaga---ctctgctcaagccaccatatcagactttgagcagcactatccaagtctatctgagagcac 533  Q
    |||||||| |||| |||||||||||||||||||||||   |  || | |||||| ||||||||||||||| || |||||| |||||||||||||||||||    
T  17114942 acactctcggccacgacaagagacttgaggtggaagaagacaatgatgaagccatcatatcagactttgaccaacactatgcaagtctatctgagagcac 17114843  T
Q  534 taaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    |||| || |||||||||||||| |    ||||| |||||||||||| ||||||||||||| ||| ||||    
T  17114842 taagacagagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccagaat 17114774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 495 - 599
Target Start/End: Complemental strand, 41035192 - 41035085
Alignment:
Q  495 agactttgagcagcactatccaagtctatctgagagcactaaggcatagaga---aagaagaagtaggtgaataaagtgaagcctactagctttaactca 591  Q
    ||||||||| || ||||||||||||||||||||||||| ||||||| ||| |   ||||||||| |||||||||   |||||||| ||||||||||||||    
T  41035192 agactttgaacaacactatccaagtctatctgagagcaataaggcagagaaaaagaagaagaagcaggtgaatattttgaagccttctagctttaactca 41035093  T
Q  592 gccggaat 599  Q
    ||||||||    
T  41035092 gccggaat 41035085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 491 - 599
Target Start/End: Complemental strand, 19394298 - 19394187
Alignment:
Q  491 tatcagactttgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaa 587  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||| |||||||||| ||   ||||  |||||||||||| || |||||||    
T  19394298 tatcagactttgagcagcactatccaagcctatcggagagcactaaagcagagaaaaagaagaagaagcatgtgagcaaagtgaagccttcttgctttaa 19394199  T
Q  588 ctcagccggaat 599  Q
    || ||| |||||    
T  19394198 cttagctggaat 19394187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 503 - 595
Target Start/End: Complemental strand, 50903641 - 50903546
Alignment:
Q  503 agcagcactatccaagtctatctgagagcactaaggcatagagaaag---aagaagtaggtgaataaagtgaagcctactagctttaactcagccg 595  Q
    |||| |||||||||||||| || ||||||||||||||| || |||||   |||||| ||||||| |||||||||||||||||||| ||||||||||    
T  50903641 agcaacactatccaagtctgtcagagagcactaaggcagagtgaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagccg 50903546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 426 - 475
Target Start/End: Complemental strand, 13062162 - 13062113
Alignment:
Q  426 tgtgatggaggacactctcagccatgacaagagacttgaggtggaagact 475  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13062162 tgtgatggaggacactctcagccatgacaagagacttgagatggaagact 13062113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 595
Target Start/End: Complemental strand, 13062111 - 13062026
Alignment:
Q  513 tccaagtctatctgagagcactaaggcatagaga---aagaagaagtaggtgaataaagtgaagcctactagctttaactcagccg 595  Q
    ||||||||||||||||||||||||| || ||| |   ||||||||| ||||||| ||||||| ||||  |||||||||||||||||    
T  13062111 tccaagtctatctgagagcactaagacagagaaaaagaagaagaagcaggtgaacaaagtgatgccttttagctttaactcagccg 13062026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 49492039 - 49491940
Alignment:
Q  502 gagcagcactatccaagtctatctgagagcactaaggcatagagaa---agaagaagtaggtgaataaagtgaagcctactagctttaactcagccggaa 598  Q
    ||||| |||||||||||||| |  |||||||||||||||  |||||   |||||||| | ||||| |||||| ||||||||||||| |||||||||||||    
T  49492039 gagcaacactatccaagtctgttagagagcactaaggcagggagaaagcagaagaagcatgtgaacaaagtg-agcctactagcttcaactcagccggaa 49491941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 535
Target Start/End: Original strand, 39332281 - 39332323
Alignment:
Q  493 tcagactttgagcagcactatccaagtctatctgagagcacta 535  Q
    |||||||||||||||||||||||||| |||||  |||||||||    
T  39332281 tcagactttgagcagcactatccaagcctatcgaagagcacta 39332323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 599
Target Start/End: Original strand, 3374311 - 3374363
Alignment:
Q  547 aagaagaagtaggtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    ||||||||| | ||||| |||||||||||  |||| |||||||||||||||||    
T  3374311 aagaagaagcaagtgaacaaagtgaagccggctagatttaactcagccggaat 3374363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 51524824 - 51524927
Alignment:
Q  499 tttgagcagcactatccaagtctatctgagagcactaaggcatagaga---aagaagaagtaggtgaataaagtgaagcctactagctttaactcagccg 595  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||||   ||||||||| ||||| ||||||||| ||||  |||||||||||||||||    
T  51524824 tttgagcagcactatccaagtctatctgagagcaataaggctgagagaaagaagaagaagcaggtgcataaagtgaggccttatagctttaactcagccg 51524923  T
Q  596 gaat 599  Q
    ||||    
T  51524924 gaat 51524927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 592
Target Start/End: Complemental strand, 26796993 - 26796887
Alignment:
Q  489 catatcagactttgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagcttt 585  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| ||   || || ||||||||| |||| ||||||    
T  26796993 catatcagattttgagcagcaccatccgagtctatctgagagcactaaggcagagagaaagaagaagaagcatgttaacaaagtgaagtctaccagcttt 26796894  T
Q  586 aactcag 592  Q
    |||||||    
T  26796893 aactcag 26796887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 599
Target Start/End: Original strand, 16893033 - 16893137
Alignment:
Q  498 ctttgagcagcactatccaagtctatctgagagcactaaggcatagagaaag---aagaagtaggtgaataaagtgaagcctactagctttaactcagcc 594  Q
    |||||||||||||||||||||||| || ||||||||||||||| | | ||||   |||||| ||||||| ||||||||||||||||| || |||||||||    
T  16893033 ctttgagcagcactatccaagtctgtcagagagcactaaggcagataaaaagcaaaagaagcaggtgaacaaagtgaagcctactaggttcaactcagcc 16893132  T
Q  595 ggaat 599  Q
    |||||    
T  16893133 ggaat 16893137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 489 - 592
Target Start/End: Original strand, 31067122 - 31067228
Alignment:
Q  489 catatcagactttgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagcttt 585  Q
    |||||| ||||||||| | || |||||||||||||| ||||||||||||||| ||| |||||||||| ||   ||| | ||||||| || | ||||||||    
T  31067122 catatctgactttgagaaacattatccaagtctatcggagagcactaaggcagagaaaaagaagaagaagcatgtgcacaaagtgaggcttgctagcttt 31067221  T
Q  586 aactcag 592  Q
    |||||||    
T  31067222 aactcag 31067228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 475
Target Start/End: Complemental strand, 35526764 - 35526716
Alignment:
Q  427 gtgatggaggacactctcagccatgacaagagacttgaggtggaagact 475  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  35526764 gtgatggaggacactgtcagccatgacaagaggcttgagatggaagact 35526716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 599
Target Start/End: Complemental strand, 35526718 - 35526621
Alignment:
Q  509 actatccaagtctatctgagagcactaa----ggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    ||||||||||||||||||||||||||||    | || |||| ||||||||| ||   ||||| ||||||| |||| ||||||||||||| ||||||||    
T  35526718 actatccaagtctatctgagagcactaattaagacaaagagtaagaagaagaagcaggtgaacaaagtgatgccttctagctttaactcggccggaat 35526621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 491 - 540
Target Start/End: Complemental strand, 21845062 - 21845013
Alignment:
Q  491 tatcagactttgagcagcactatccaagtctatctgagagcactaaggca 540  Q
    ||||| |||||||||||||||||||||| |||| |||||||| |||||||    
T  21845062 tatcatactttgagcagcactatccaagcctatatgagagcattaaggca 21845013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 473
Target Start/End: Complemental strand, 31163162 - 31163129
Alignment:
Q  440 ctctcagccatgacaagagacttgaggtggaaga 473  Q
    ||||||||||||||||| ||||||||||||||||    
T  31163162 ctctcagccatgacaagtgacttgaggtggaaga 31163129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 503 - 599
Target Start/End: Complemental strand, 14296417 - 14296318
Alignment:
Q  503 agcagcactatccaagtctatctgagagcactaaggcatagagaaagaa---gaagtaggtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    |||||||||||||||||||||||||||| ||||||| | ||||||||||   |||| || |||| ||| |||||||||||||||||||||||||||||||    
T  14296417 agcagcactatccaagtctatctgagagtactaaggtagagagaaagaagaagaagcagatgaacaaaatgaagcctactagctttaactcagccggaat 14296318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 499 - 599
Target Start/End: Complemental strand, 18811868 - 18811765
Alignment:
Q  499 tttgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaa---gaagtaggtgaataaagtgaagcctactagctttaactcagccg 595  Q
    ||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||   |||| ||||| |||||||||||| |  |||||||||||||||||    
T  18811868 tttgagcagcactatccaagtttatttgagagcaataaggcagagagaaagaagaagaagcaggtgcataaagtgaagctttatagctttaactcagccg 18811769  T
Q  596 gaat 599  Q
    ||||    
T  18811768 gaat 18811765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 509 - 599
Target Start/End: Original strand, 31092283 - 31092376
Alignment:
Q  509 actatccaagtctatctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| |    ||||||||||||| |||| |||| |||||||||||||||||    
T  31092283 actatccaagtctatctgagagcactaagacagagagaaagaagaagaatcacgtgaataaagtgatgccttctagatttaactcagccggaat 31092376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 509 - 599
Target Start/End: Original strand, 37344586 - 37344679
Alignment:
Q  509 actatccaagtctatctgagagcactaaggcatagagaaagaagaag---taggtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||    ||||||| |||||||| | | |||| |||||||||||||||||    
T  37344586 actatccaagtctatttgaaagcactaaggcagagagaaagaagaagaaacaggtgaacaaagtgaatcattctagttttaactcagccggaat 37344679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 495 - 599
Target Start/End: Original strand, 18693057 - 18693161
Alignment:
Q  495 agactttgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaagaagtaggtgaataaagtgaagcctactagctttaactcagcc 594  Q
    |||||||| ||||||||||||||  || | |||||||||||||||| ||| ||||||||||   |  || ||||||||| || |||||||||||| ||||    
T  18693057 agactttgtgcagcactatccaaacctttatgagagcactaaggcagagaaaaagaagaagcgtgcaaacaaagtgaagtctgctagctttaactaagcc 18693156  T
Q  595 ggaat 599  Q
    |||||    
T  18693157 ggaat 18693161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 8413928 - 8413877
Alignment:
Q  548 agaagaagtaggtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    |||||||| ||| ||| |||||||||||||||||||| |||||| |||||||    
T  8413928 agaagaagcaggcgaacaaagtgaagcctactagcttcaactcaaccggaat 8413877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 37344540 - 37344588
Alignment:
Q  427 gtgatggaggacactctcagccatgacaagagacttgaggtggaagact 475  Q
    |||||| ||||||||||||||||||||  ||| |||||| |||||||||    
T  37344540 gtgatgaaggacactctcagccatgacctgaggcttgagatggaagact 37344588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 490 - 593
Target Start/End: Original strand, 15188014 - 15188117
Alignment:
Q  490 atatcagactttgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaagaagtaggtgaataaagtgaagcctactagctttaact 589  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| ||| ||| |||||||||| |  |||  ||||||||||||  |||||||||||    
T  15188014 atatcagactttgagcagcactatccaagcctatatgagagcactaatgcagagaaaaagaagaagcatatgagcaaagtgaagcctgatagctttaact 15188113  T
Q  590 cagc 593  Q
    ||||    
T  15188114 cagc 15188117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 501 - 599
Target Start/End: Original strand, 36868251 - 36868352
Alignment:
Q  501 tgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaactcagccgga 597  Q
    |||| ||||||||||||||  ||||||||||| |||||   |||||||||||||| ||   |||||||||||||||||| ||||||||||||||||||||    
T  36868251 tgagtagcactatccaagttaatctgagagcaataaggtggagagaaagaagaagaagcaagtgaataaagtgaagccttctagctttaactcagccgga 36868350  T
Q  598 at 599  Q
    ||    
T  36868351 at 36868352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 509 - 599
Target Start/End: Original strand, 19215349 - 19215442
Alignment:
Q  509 actatccaagtctatctgagagcactaaggcatagagaa---agaagaagtaggtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    |||||||||| |||| ||||||||||||| || ||||||   |||||||| ||||||| ||||||| |||  ||||||||||||||||| ||||    
T  19215349 actatccaagcctatttgagagcactaagacagagagaatgaagaagaagcaggtgaacaaagtgatgccgtctagctttaactcagcccgaat 19215442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 497 - 555
Target Start/End: Complemental strand, 37307332 - 37307274
Alignment:
Q  497 actttgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaagaag 555  Q
    |||||||| ||||||||| |||||| |||||||||||||||| | ||||||||||||||    
T  37307332 actttgagtagcactatctaagtctgtctgagagcactaaggtagagagaaagaagaag 37307274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 509 - 592
Target Start/End: Complemental strand, 788428 - 788342
Alignment:
Q  509 actatccaagtctatctgagagcactaaggcatagagaaagaa---gaagtaggtgaataaagtgaagcctactagctttaactcag 592  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||   |||| || |||| ||| |||||||| ||| |||||||||||    
T  788428 actatccaagtctatttgagagcattaaggcagagagaaagaagaagaagcagatgaacaaaatgaagccttctaactttaactcag 788342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Complemental strand, 788474 - 788437
Alignment:
Q  427 gtgatggaggacactctcagccatgacaagagacttga 464  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  788474 gtgatggaggtcactctcagccatgacaagaggcttga 788437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 26449697 - 26449596
Alignment:
Q  501 tgagcagcactatccaagtctatctgagagcactaaggcatagagaaag---aagaagtaggtgaataaagtgaagcctactagctttaactcagccgga 597  Q
    |||||| |||||||| ||| | || ||||||||||||||| ||||||||   |||||| ||||||| | |||||||||||||||||| | ||||||||||    
T  26449697 tgagcaacactatcctagtttgtcagagagcactaaggcagagagaaagcagaagaagcaggtgaacagagtgaagcctactagcttcagctcagccgga 26449598  T
Q  598 at 599  Q
    ||    
T  26449597 at 26449596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 491 - 593
Target Start/End: Original strand, 33191227 - 33191332
Alignment:
Q  491 tatcagactttgagcagcactatccaagtctatctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaa 587  Q
    |||||||||||||||||||||||||||  ||||| | ||||||||| ||| ||| || ||||||| |    ||||  |||||||||||| ||||||||||    
T  33191227 tatcagactttgagcagcactatccaaacctatcggggagcactaaagcagagaaaatgaagaagaaacatgtgagcaaagtgaagcctgctagctttaa 33191326  T
Q  588 ctcagc 593  Q
    ||||||    
T  33191327 ctcagc 33191332  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 599
Target Start/End: Complemental strand, 19407955 - 19407903
Alignment:
Q  547 aagaagaagtaggtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    ||||||||| ||||||| |||||||  ||| ||||||||||||||||||||||    
T  19407955 aagaagaagcaggtgaacaaagtgattccttctagctttaactcagccggaat 19407903  T

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Target: scaffold0531 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 599
Target Start/End: Original strand, 10228 - 10319
Alignment:
Q  511 tatccaagtctatctgagagcactaaggcatagagaaagaagaagtag---gtgaataaagtgaagcctactagctttaactcagccggaat 599  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||| ||   ||| | ||||||| |||| |||| |||||||||||||||||    
T  10228 tatccaagtctatcggagagcactaaggcagagaaaaagaagaagaagcacgtgcacaaagtgaggcctgctagttttaactcagccggaat 10319  T

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