View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20964_high_3 (Length: 579)

Name: NF20964_high_3
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20964_high_3
NF20964_high_3
[»] chr4 (30 HSPs)
chr4 (256-561)||(2346584-2346888)
chr4 (178-260)||(2346327-2346409)
chr4 (9-135)||(2346413-2346537)
chr4 (61-159)||(19680320-19680418)
chr4 (143-260)||(36165750-36165867)
chr4 (70-252)||(36165462-36165644)
chr4 (169-258)||(19680590-19680679)
chr4 (144-225)||(23564418-23564499)
chr4 (64-204)||(18523207-18523347)
chr4 (154-240)||(23564156-23564242)
chr4 (138-206)||(1460388-1460456)
chr4 (140-259)||(36165314-36165437)
chr4 (172-245)||(23566628-23566701)
chr4 (118-218)||(9928805-9928909)
chr4 (118-245)||(53089826-53089953)
chr4 (144-190)||(23564356-23564402)
chr4 (60-177)||(23564548-23564665)
chr4 (127-202)||(2346177-2346252)
chr4 (142-245)||(34542275-34542378)
chr4 (118-188)||(11784979-11785049)
chr4 (60-132)||(857019-857091)
chr4 (164-220)||(36165209-36165264)
chr4 (193-260)||(8836953-8837020)
chr4 (60-127)||(18523008-18523075)
chr4 (169-212)||(41389521-41389564)
chr4 (164-202)||(37927658-37927696)
chr4 (60-150)||(41389426-41389516)
chr4 (59-101)||(55241497-55241539)
chr4 (142-202)||(25050085-25050145)
chr4 (204-260)||(54137220-54137276)
[»] chr5 (8 HSPs)
chr5 (60-203)||(8402122-8402265)
chr5 (60-153)||(8401993-8402086)
chr5 (60-258)||(28431955-28432146)
chr5 (142-225)||(42193324-42193407)
chr5 (189-257)||(12867584-12867652)
chr5 (189-259)||(12835750-12835820)
chr5 (169-202)||(31540325-31540358)
chr5 (258-310)||(9963409-9963461)
[»] chr3 (18 HSPs)
chr3 (60-259)||(20995623-20995824)
chr3 (60-202)||(30135501-30135642)
chr3 (60-202)||(30141630-30141771)
chr3 (60-202)||(30145052-30145193)
chr3 (60-203)||(50196834-50196976)
chr3 (60-201)||(30130781-30130922)
chr3 (81-257)||(50197043-50197207)
chr3 (160-258)||(20982741-20982839)
chr3 (59-259)||(20491009-20491206)
chr3 (72-188)||(11047446-11047562)
chr3 (141-202)||(20982645-20982706)
chr3 (60-188)||(20490865-20490994)
chr3 (162-242)||(20982186-20982267)
chr3 (60-100)||(30134105-30134145)
chr3 (148-202)||(20995535-20995589)
chr3 (155-200)||(22312204-22312249)
chr3 (258-311)||(43774177-43774230)
chr3 (164-260)||(22312359-22312455)
[»] chr7 (9 HSPs)
chr7 (59-202)||(2911951-2912094)
chr7 (65-160)||(18226262-18226357)
chr7 (161-257)||(5473217-5473313)
chr7 (154-238)||(35035088-35035172)
chr7 (60-177)||(8745861-8745978)
chr7 (59-224)||(8745644-8745811)
chr7 (171-259)||(33804218-33804306)
chr7 (72-190)||(41243214-41243332)
chr7 (144-212)||(35035295-35035363)
[»] chr2 (3 HSPs)
chr2 (60-260)||(43829597-43829797)
chr2 (60-202)||(43829811-43829953)
chr2 (156-200)||(36201865-36201909)
[»] chr1 (14 HSPs)
chr1 (115-202)||(10645531-10645618)
chr1 (60-165)||(10645763-10645868)
chr1 (170-245)||(370672-370751)
chr1 (60-202)||(3142872-3143014)
chr1 (58-203)||(3371579-3371723)
chr1 (134-202)||(30602336-30602404)
chr1 (144-242)||(48957755-48957854)
chr1 (169-260)||(49293102-49293193)
chr1 (193-259)||(10645695-10645761)
chr1 (148-212)||(32968548-32968612)
chr1 (76-188)||(49292960-49293072)
chr1 (115-202)||(28843432-28843519)
chr1 (193-259)||(30602487-30602553)
chr1 (76-219)||(35536786-35536929)
[»] scaffold0236 (1 HSPs)
scaffold0236 (60-202)||(22340-22482)
[»] chr6 (3 HSPs)
chr6 (72-213)||(10742173-10742315)
chr6 (113-202)||(8535599-8535688)
chr6 (60-129)||(33104648-33104719)
[»] scaffold0557 (2 HSPs)
scaffold0557 (169-239)||(4595-4665)
scaffold0557 (174-220)||(4022-4068)
[»] chr8 (6 HSPs)
chr8 (72-224)||(30525347-30525497)
chr8 (169-258)||(42160312-42160401)
chr8 (193-246)||(12704173-12704226)
chr8 (154-202)||(27461242-27461290)
chr8 (59-100)||(42160477-42160518)
chr8 (148-188)||(12704219-12704259)
[»] scaffold0442 (1 HSPs)
scaffold0442 (169-242)||(8015-8088)
[»] scaffold1432 (1 HSPs)
scaffold1432 (76-188)||(949-1061)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 256 - 561
Target Start/End: Original strand, 2346584 - 2346888
Alignment:
Q  256 aacccttcatataacaagacattgcccctgccaactaagctatactcagggggacacaaaactcaatattttaattgggacaagaaaacttatttaaccn 355  Q
    |||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||      
T  2346584 aacccttcatataacaaggcattgcccttgccaactaagctatgctcagagggacacaaaactcaatattttaattgggacaagaaaacttatttaac-t 2346682  T
Q  356 nnnnnnnatgaaaaatatttaaggtgagtggatggtgtcattcaagactaatgttacttaacaattaagtagtttagacacgaagttacttagttaccaa 455  Q
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2346683 tttttttatgaaaaatatttaaggtgagaggatggtgtcattcaagactcatgttacttaacaattaagtagtttagatacgaagttacttagttaccaa 2346782  T
Q  456 ggaaataaaacttagccaagaaacaaagagtagttgcttaccaagaaataaaactaaatgaatatttcctcgggttatttcttggcttctgaattatgtg 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2346783 ggaaataaaacttagccaagaaacaaagagtagttgcttaccaagaaataaaactaaatgaacatttcctcgggttatttcttggcttctgaattatgtg 2346882  T
Q  556 tattgt 561  Q
    ||||||    
T  2346883 tattgt 2346888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 2346409 - 2346327
Alignment:
Q  178 aacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaaccc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  2346409 aacaacttcaaaacaaacttcaacacccaccctcacacctagcatgggtctgggtccaattcccacatcgcaatccttaaccc 2346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 2346537 - 2346413
Alignment:
Q  9 aaaggtgaatgcactctagccactaggttggttcnnnnnnnaagtcaactttgttaaataagcttggatctcatcccaaaagatagctcaaaggaggagg 108  Q
    ||||||||||||||||||||||||||||| |||         ||||||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  2346537 aaaggtgaatgcactctagccactaggttagttttttttt--agtcaaccttgttaaataagcttagatctcatcccaaaagctagctcgaaggaggagg 2346440  T
Q  109 ggattgaagcatatttatacaatcgac 135  Q
    |||||||||||||||||||||||||||    
T  2346439 ggattgaagcatatttatacaatcgac 2346413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 19680320 - 19680418
Alignment:
Q  61 gttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    |||||||| |||||||||| |||||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||||| | ||||||||||||||    
T  19680320 gttaaatatgcttggatcttatcccaaaagttagctcaaaagaggaggggactcaagcatatttatacaatcgacagcccggaatcctgagcgatgtgg 19680418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 143 - 260
Target Start/End: Original strand, 36165750 - 36165867
Alignment:
Q  143 gaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattccca 242  Q
    |||||| ||| ||||||||| || | ||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||  ||||||||| |||    
T  36165750 gaacctaagcaatgtgggactaacaacaaactacaaacaacttcaaaacaaccttcaacgcccaccctcacgcctagcgtgggtccgggtccaatttcca 36165849  T
Q  243 catcgcaatccttaaccc 260  Q
    |||  |||| ||||||||    
T  36165850 cattacaattcttaaccc 36165867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 70 - 252
Target Start/End: Original strand, 36165462 - 36165644
Alignment:
Q  70 gcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgggacaaatacc 169  Q
    ||||||||||||||||||||  |||| |||| || ||||| | | || ||| |||||||| || ||| ||||||||||| ||| ||||||||| |  | |    
T  36165462 gcttggatctcatcccaaaatctagcacaaaagatgagggtactcaaacatctttatacactcaacaacccgggaaccttagcaatgtgggactagaaac 36165561  T
Q  170 aaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatc 252  Q
    ||| |||||||||||||||||| ||||||||||||||| || |  ||||||||| | ||  ||| ||||||||||| ||||||    
T  36165562 aaattacaaacaacttcaaaactaacttcaacacccactcttatgcctagcgtgagcctgagtctaattcccacattgcaatc 36165644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 19680590 - 19680679
Alignment:
Q  169 caaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaac 258  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||||||    
T  19680590 caaactacaaataactttaaaaccaactttaacacccaccctcacgcctagcgtgggccttggtcgaattcccacatcgcaatccttaac 19680679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 23564418 - 23564499
Alignment:
Q  144 aacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtggg 225  Q
    ||||||| | |||||||||||||| ||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||    
T  23564418 aacctgatcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtggg 23564499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 18523207 - 18523347
Alignment:
Q  64 aaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgggaca 163  Q
    ||||| ||||||||||  |||||||||||| ||||||||| ||||| | | || ||||||||||   || ||| ||||| ||||||||| |||||||       
T  18523207 aaataggcttggatctgctcccaaaagatacctcaaaggatgagggtactcaaacatatttatatgttcaacaacccggaaacctgagcaatgtggggtt 18523306  T
Q  164 aataccaaactacaaacaacttcaaaacaaacttcaacacc 204  Q
    |  | ||||||||||||||||||||||| ||||||||||||    
T  18523307 agaaacaaactacaaacaacttcaaaaccaacttcaacacc 18523347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 23564156 - 23564242
Alignment:
Q  154 atgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcc 240  Q
    |||||||| ||||| |||||||||| |||||| ||||| ||||||||||| |||||||||| ||||||||||  | |||||||||||    
T  23564156 atgtgggataaataacaaactacaatcaactttaaaaccaacttcaacactcaccctcacatctagcgtgggattgggtccaattcc 23564242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 1460456 - 1460388
Alignment:
Q  138 cccgggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaacaccca 206  Q
    |||| |||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  1460456 cccgagaacctgagcaatgtgagacaaataacaaactacaaacaacttcaaaaccaacttgaacaccca 1460388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 140 - 259
Target Start/End: Original strand, 36165314 - 36165437
Alignment:
Q  140 cgggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaat-- 237  Q
    ||||||||||||| ||||| ||  || | ||||||| ||||||||| ||||  ||||||||||||||||||||| |||||||||||  |  |||||||      
T  36165314 cgggaacctgagcaatgtgagagtaacaacaaactaaaaacaactttaaaatcaacttcaacacccaccctcacgcctagcgtgggcttgagtccaattc 36165413  T
Q  238 --tcccacatcgcaatccttaacc 259  Q
      |||||||| |||||||||||||    
T  36165414 tgtcccacattgcaatccttaacc 36165437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 23566628 - 23566701
Alignment:
Q  172 actacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacat 245  Q
    |||||| ||||||||||||| |||||||||| |||||||||| ||||||||||| ||  |||||||| ||||||    
T  23566628 actacagacaacttcaaaaccaacttcaacatccaccctcacgcctagcgtgggcctgagtccaatttccacat 23566701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 9928805 - 9928909
Alignment:
Q  118 catatttatacaatcgacagcccgggaacctgagcgatgtgggacaaat----accaaactacaaacaacttcaaaacaaacttcaacacccaccctcac 213  Q
    |||||||||||| || ||| ||||| || |||||| |||||||| ||||    | ||||||||||||||||||||||| |||||||||| ||| ||||||    
T  9928805 catatttatacactcaacaacccggaaatctgagcaatgtgggataaattaataacaaactacaaacaacttcaaaactaacttcaacatccatcctcac 9928904  T
Q  214 accta 218  Q
     ||||    
T  9928905 gccta 9928909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 53089826 - 53089953
Alignment:
Q  118 catatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacct 217  Q
    |||||||||||| |  |||| | |||||||||||  | ||||||| || | |||||||||  |||||||||||| | ||||||||| |||||||||  ||    
T  53089826 catatttatacacttaacagtctgggaacctgagtaaagtgggactaacaacaaactacatgcaacttcaaaactaccttcaacacacaccctcacctct 53089925  T
Q  218 agcgtgggtctaggtccaattcccacat 245  Q
    |||||||| || || ||||||| |||||    
T  53089926 agcgtgggcctgggcccaattctcacat 53089953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 23564356 - 23564402
Alignment:
Q  144 aacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaa 190  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||    
T  23564356 aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa 23564402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 23564548 - 23564665
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    ||||||||| | ||||||||||||||||||| |||||||||||| ||||| | | ||||||| ||  ||| || | || |||||||||||  | ||||      
T  23564548 tgttaaataggtttggatctcatcccaaaagttagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaa 23564647  T
Q  160 gacaaataccaaactaca 177  Q
    |||||||| |||||||||    
T  23564648 gacaaataacaaactaca 23564665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 2346252 - 2346177
Alignment:
Q  127 acaatcgacagcccgggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    ||||| ||| ||| ||||||||||||||||||| ||||| |  |||||||||||||||| ||||| ||||| ||||    
T  2346252 acaattgacggcctgggaacctgagcgatgtggaacaaacaataaactacaaacaactttaaaaccaacttgaaca 2346177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 34542275 - 34542378
Alignment:
Q  142 ggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattccc 241  Q
    ||||||||||| || ||||||||| | |||| |||| |||| || ||||  ||||||||||||||| ||||  ||||||||||| ||  ||||||||| |    
T  34542275 ggaacctgagcaatatgggacaaacaacaaattacacacaattttaaaatcaacttcaacacccactctcatgcctagcgtgggcctgcgtccaattctc 34542374  T
Q  242 acat 245  Q
    ||||    
T  34542375 acat 34542378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 11785049 - 11784979
Alignment:
Q  118 catatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaa 188  Q
    |||||||||||| || |||| ||| |||||||||  ||||||||| || | ||||||||||||||||||||    
T  11785049 catatttatacactcaacagtccgagaacctgagtaatgtgggactaacaacaaactacaaacaacttcaa 11784979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 857019 - 857091
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatc 132  Q
    |||| |||||| |||| | ||||||||||||  |||||||| ||||||||||   ||||||||||||||||||    
T  857019 tgtttaataagtttggttatcatcccaaaagcaagctcaaatgaggaggggacccaagcatatttatacaatc 857091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 36165209 - 36165264
Alignment:
Q  164 aataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagc 220  Q
    |||| |||||||||||||| |||||||| |||||||||| ||||||| |||||||||    
T  36165209 aataacaaactacaaacaatttcaaaaccaacttcaacatccaccct-acacctagc 36165264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 8836953 - 8837020
Alignment:
Q  193 aacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaaccc 260  Q
    |||||||||| ||||||||||  ||||||||| ||| | | |||||||| ||| ||||||||||||||    
T  8836953 aacttcaacatccaccctcacgtctagcgtggttctggtttcaattcccgcattgcaatccttaaccc 8837020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 18523008 - 18523075
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttata 127  Q
    |||||||| |||||||||||||| ||||||| | |||||||||| || || | | |||||||||||||    
T  18523008 tgttaaatgagcttggatctcataccaaaagctcgctcaaaggatgatggtactcaagcatatttata 18523075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 41389521 - 41389564
Alignment:
Q  169 caaactacaaacaacttcaaaacaaacttcaacacccaccctca 212  Q
    |||| |||||||||||||||||| |||||||||| |||||||||    
T  41389521 caaaatacaaacaacttcaaaaccaacttcaacatccaccctca 41389564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 37927696 - 37927658
Alignment:
Q  164 aataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  37927696 aataacaaactacaaacaacttcaaaactaacttcaaca 37927658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 41389426 - 41389516
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctga 150  Q
    ||||||||| | ||| |||| ||| |||||| ||||||||||||  |||||| ||||  ||||||||||| || ||| || ||||||||||    
T  41389426 tgttaaataggtttgaatctaatctcaaaaggtagctcaaaggataaggggactgaaatatatttatacattcaacaacctgggaacctga 41389516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 55241539 - 55241497
Alignment:
Q  59 ttgttaaataagcttggatctcatcccaaaagatagctcaaag 101  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||    
T  55241539 ttgttaaataaacttgaatctcatcccaaaagctagctcaaag 55241497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 25050145 - 25050085
Alignment:
Q  142 ggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    |||||| |||||||||| ||| || | ||  ||||||||||||||||||| ||||||||||    
T  25050145 ggaacccgagcgatgtgagactaacaacatgctacaaacaacttcaaaaccaacttcaaca 25050085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 54137220 - 54137276
Alignment:
Q  204 ccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaaccc 260  Q
    |||||||||| ||||| ||||| || |||| ||||| ||||| ||||||||||||||    
T  54137220 ccaccctcacgcctagagtgggcctgggtctaattctcacattgcaatccttaaccc 54137276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 8402122 - 8402265
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    ||||||||||  |||||| |||||||||||| |||||||||||||||||| | | || |||||||||||| |||||||||||  |||||||| |||||||    
T  8402122 tgttaaataaatttggatttcatcccaaaagttagctcaaaggaggagggtactcaaacatatttatacactcgacagcccgaaaacctgagagatgtgg 8402221  T
Q  160 gacaaataccaaactacaaacaacttcaaaacaaacttcaacac 203  Q
     |  || | ||||||||||||||||| ||||| |||||||||||    
T  8402222 aagtaacaacaaactacaaacaactttaaaaccaacttcaacac 8402265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 8401993 - 8402086
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcg 153  Q
    ||||||||||| ||||||||||| ||||||| |||||||||||||||||| | | ||||||||||||||| ||||||||||| |||||||||||    
T  8401993 tgttaaataagtttggatctcattccaaaagttagctcaaaggaggagggtactcaagcatatttatacactcgacagcccgagaacctgagcg 8402086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 28431955 - 28432146
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    ||||||||| ||||| || |||| ||||||| ||| | |||||| ||||  | | ||||||||||||||| ||  |||||| ||||||| ||| |||||     
T  28431955 tgttaaataggcttgaatttcattccaaaagctagtttaaaggatgaggatactcaagcatatttatacactcagcagcccaggaacctaagcaatgtga 28432054  T
Q  160 gacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaac 258  Q
    ||||||||       ||||||||| ||||||| ||||||| |||||||||||   ||||| |||||||| |||||||||||||||| ||||| ||||||    
T  28432055 gacaaata-------acaaacaacatcaaaaccaacttcagcacccaccctcttgcctagtgtgggtctgggtccaattcccacattgcaattcttaac 28432146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 42193324 - 42193407
Alignment:
Q  142 ggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtggg 225  Q
    ||||||||||| ||||| |||||||| ||| |||||| |||||||||||   ||||||||| ||||||||||  ||||||||||    
T  42193324 ggaacctgagcaatgtgagacaaataacaatctacaagcaacttcaaaatcgacttcaacatccaccctcacgtctagcgtggg 42193407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 12867584 - 12867652
Alignment:
Q  189 aacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaa 257  Q
    ||||||||||||||  ||||||||||||||||||||  ||||||| |||| |||| || ||||||||||    
T  12867584 aacaaacttcaacattcaccctcacacctagcgtggacctaggtcaaatttccacttcacaatccttaa 12867652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 12835750 - 12835820
Alignment:
Q  189 aacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaacc 259  Q
    ||||||||||||||  ||||||||| ||||||||||  ||||||| |||| |||| || ||||||||||||    
T  12835750 aacaaacttcaacattcaccctcacgcctagcgtggacctaggtcaaatttccacttcacaatccttaacc 12835820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 31540325 - 31540358
Alignment:
Q  169 caaactacaaacaacttcaaaacaaacttcaaca 202  Q
    ||||||||||||||||||||||| ||||||||||    
T  31540325 caaactacaaacaacttcaaaaccaacttcaaca 31540358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 9963461 - 9963409
Alignment:
Q  258 cccttcatataacaagacattgcccctgccaactaagctatactcagggggac 310  Q
    |||| ||||||||||  ||||| ||||||||||| ||||||||||| ||||||    
T  9963461 ccctgcatataacaatgcattgtccctgccaactgagctatactcacggggac 9963409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 60 - 259
Target Start/End: Complemental strand, 20995824 - 20995623
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaaga--tagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgt 157  Q
    |||| ||| ||||| ||||||||| |||||||  |||||||||||| ||| | | | || |||||||||||| || || |  ||| |||||| || ||||    
T  20995824 tgttcaatgagctttgatctcatcgcaaaagagctagctcaaaggatgagcgtagtcaaacatatttatacattcaacggttcggaaacctgtgcaatgt 20995725  T
Q  158 gggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaa 257  Q
    | ||| |||| ||| ||| ||||||||||||||| ||||||||||||||||||||| |||| |||||| |  |||| |||| |||||| |||||| ||||    
T  20995724 gagacgaataacaacctataaacaacttcaaaactaacttcaacacccaccctcacgcctaacgtgggcccgggtctaatttccacattgcaatctttaa 20995625  T
Q  258 cc 259  Q
    ||    
T  20995624 cc 20995623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 30135501 - 30135642
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    ||||||||| ||||||||||||||||||||| ||||||||| || ||||| | | |||||||||||||||  | ||||||   |||| |||||||| | |    
T  30135501 tgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttatacatccaacagcctaagaacttgagcgatatag 30135600  T
Q  160 gacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    |||||||| ||||||||||| || |||||||| ||||||||||    
T  30135601 gacaaataacaaactacaaataa-ttcaaaaccaacttcaaca 30135642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 30141630 - 30141771
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    ||||||||| ||||||||||||||||||||| ||||||||| || ||||| | | |||||||||||||||  | ||||||   |||| |||||||| | |    
T  30141630 tgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttatacatccaacagcctaagaacttgagcgatatag 30141729  T
Q  160 gacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    |||||||| ||||||||||| || |||||||| ||||||||||    
T  30141730 gacaaataacaaactacaaataa-ttcaaaaccaacttcaaca 30141771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 30145052 - 30145193
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    ||||||||| ||||||||||||||||||||| ||||||||| || ||||| | | |||||||||||||||  | ||||||   |||| |||||||| | |    
T  30145052 tgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttatacatccaacagcctaagaacttgagcgatatag 30145151  T
Q  160 gacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    |||||||| ||||||||||| || |||||||| ||||||||||    
T  30145152 gacaaataacaaactacaaataa-ttcaaaaccaacttcaaca 30145193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 60 - 203
Target Start/End: Complemental strand, 50196976 - 50196834
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    ||||||||| | ||||||||||||||||||| |||||||||||| ||||| ||| || |||||||||||| || ||||  ||| ||| ||||| |||| |    
T  50196976 tgttaaataggtttggatctcatcccaaaagttagctcaaaggatgagggtatttaaacatatttatacactcaacagtacggaaacatgagcaatgt-g 50196878  T
Q  160 gacaaataccaaactacaaacaacttcaaaacaaacttcaacac 203  Q
    |||||||| ||||||| ||| ||||||||| | ||||| |||||    
T  50196877 gacaaatatcaaactagaaataacttcaaatccaacttaaacac 50196834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 30130781 - 30130922
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    ||||||||| | ||||||||||||||||||  ||||||||| || || |  | | ||||||||||||||| || |||||||  |||||||||| |||| |    
T  30130781 tgttaaataggtttggatctcatcccaaaaactagctcaaatgatgaagatactcaagcatatttatacactcaacagcccaagaacctgagcaatgtag 30130880  T
Q  160 gacaaataccaaactacaaacaacttcaaaacaaacttcaac 201  Q
    |||| ||| || |||| ||| ||||||||||| |||||||||    
T  30130881 gacacatatcagactaaaaataacttcaaaaccaacttcaac 30130922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 81 - 257
Target Start/End: Complemental strand, 50197207 - 50197043
Alignment:
Q  81 atcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaaactacaaac 180  Q
    |||||||||| ||| |||||||| ||||| | |  | |||||||||||| || ||||  || |||||||||| |||||||||||||| ||||||| ||||    
T  50197207 atcccaaaagctagatcaaaggatgagggtactcgaccatatttatacactcaacagttcgtgaacctgagcaatgtgggacaaataacaaactataaac 50197108  T
Q  181 aacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaa 257  Q
    ||||            ||||||||||| ||||| ||||| ||||||||| |||||||| |||||| |||||||||||    
T  50197107 aact------------tcaacacccactctcacccctagtgtgggtctaagtccaatttccacattgcaatccttaa 50197043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 20982839 - 20982741
Alignment:
Q  160 gacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaac 258  Q
    |||||||| ||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||| | || |||| ||||||  ||  ||||||||||||    
T  20982839 gacaaataacaaactacaaacaactttaaaactaacttcaacatccaccctcactcctagcgtgcgcctgggtctaattcctgcaatgcaatccttaac 20982741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 59 - 259
Target Start/End: Complemental strand, 20491206 - 20491009
Alignment:
Q  59 ttgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtg 158  Q
    ||||||||| |||||||||||||||||||||| |||||||| |||  | |    | | | ||||||||||| || |||    ||||||| |||| || ||    
T  20491206 ttgttaaatgagcttggatctcatcccaaaaggtagctcaacggattatgatgctcatgaatatttatacactcaacat---gggaaccagagcaatatg 20491110  T
Q  159 ggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaac 258  Q
     ||  |||| ||||||| ||| ||||||||||| |||||||| ||||||||||||  |||| ||||| || | |||||||||||||| | |||| |||||    
T  20491109 agattaataacaaactaaaaaaaacttcaaaaccaacttcaatacccaccctcacgtctagtgtgggcctggatccaattcccacattgtaatcattaac 20491010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 11047562 - 11047446
Alignment:
Q  72 ttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaa 171  Q
    ||||||||||||  ||||| |||||||||||| ||||| | | |||| |||||||||| || ||||| |   ||||||||| ||||||||| |  | |||    
T  11047562 ttggatctcatcataaaagttagctcaaaggatgagggtactcaagcgtatttatacactcaacagcgcacaaacctgagcaatgtgggactagaaacaa 11047463  T
Q  172 actacaaacaacttcaa 188  Q
    |||||||||||||||||    
T  11047462 actacaaacaacttcaa 11047446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 20982645 - 20982706
Alignment:
Q  141 gggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    |||||||||||| |||| ||| ||||| ||||||||||||||||| ||||| ||||||||||    
T  20982645 gggaacctgagcaatgtaggataaataacaaactacaaacaactttaaaaccaacttcaaca 20982706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 20490994 - 20490865
Alignment:
Q  60 tgttaaataagcttggatctcatccc-aaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtg 158  Q
    |||||||| ||||||||||||||||| ||||| ||||||||| || ||||| | | ||| ||||||||||| || ||| |  |||||| ||||  ||||     
T  20490994 tgttaaatgagcttggatctcatcccaaaaagctagctcaaaagacgagggtactcaagtatatttatacactcaacaacttgggaacttgaggaatgta 20490895  T
Q  159 ggacaaataccaaactacaaacaacttcaa 188  Q
    | || |||| |||| ||||| |||||||||    
T  20490894 gaactaataacaaattacaaccaacttcaa 20490865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 20982186 - 20982267
Alignment:
Q  162 caaataccaaactacaaacaacttcaaaacaaacttcaacaccca-ccctcacacctagcgtgggtctaggtccaattccca 242  Q
    |||||| |||||||||||||| || ||||| |||||||||||||| |||||||  ||||| |||| ||  ||||||||||||    
T  20982186 caaataacaaactacaaacaattttaaaaccaacttcaacacccacccctcacggctagcttgggcctgagtccaattccca 20982267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 30134105 - 30134145
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaa 100  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  30134105 tgttaaataggcttggatctcatcccaaaagttagctcaaa 30134145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 20995535 - 20995589
Alignment:
Q  148 tgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    ||||| |||||| | ||||| ||||||||||||||||| ||||| ||||||||||    
T  20995535 tgagcaatgtggaataaataacaaactacaaacaactttaaaaccaacttcaaca 20995589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 22312249 - 22312204
Alignment:
Q  155 tgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaa 200  Q
    |||| ||| |||| ||||||||||||||||||||||| ||||||||    
T  22312249 tgtgagactaataacaaactacaaacaacttcaaaaccaacttcaa 22312204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 43774230 - 43774177
Alignment:
Q  258 cccttcatataacaagacattgcccctgccaactaagctatactcagggggaca 311  Q
    |||| ||||||||||  ||||| ||||||||||| ||||||||||| |||||||    
T  43774230 ccctgcatataacaatgcattgtccctgccaactgagctatactcacggggaca 43774177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 22312455 - 22312359
Alignment:
Q  164 aataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaaccc 260  Q
    |||| ||||||||||| || || ||||| ||||||||||| ||| | |||  ||||||||| |||  ||||||||  ||||| |||||| |||||||    
T  22312455 aataacaaactacaaataattttaaaaccaacttcaacactcactcacacgtctagcgtggatctgagtccaatttgcacattgcaatctttaaccc 22312359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 2911951 - 2912094
Alignment:
Q  59 ttgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtg 158  Q
    |||||||||||| ||  |||||||||||||   || |||||| || || || ||| || |||||||||||| || | ||||| ||||||||| | |||||    
T  2911951 ttgttaaataagtttaaatctcatcccaaaccctaactcaaatgatgaaggtattcaaacatatttatacactcaatagcccaggaacctgatccatgtg 2912050  T
Q  159 ggacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    ||||||||| |||||||||||||||| |||| | ||||||||||    
T  2912051 ggacaaataacaaactacaaacaactccaaagccaacttcaaca 2912094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 18226357 - 18226262
Alignment:
Q  65 aataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtggg 160  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||| || | ||  |||||||||||||||||| ||||  |||||||| ||||||||    
T  18226357 aatatgcttggatctcattccaaaagttagctcaaaggaggaggagactcaattatatttatacaatcgacatcccgaaaacctgagagatgtggg 18226262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 5473313 - 5473217
Alignment:
Q  161 acaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaa 257  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||| |||| |  | ||||| ||| |||| |||||| ||||  ||||||||||    
T  5473313 acaaataacaaactacaaacaacttcaaaaccaacttcaacacccaccttcacgctcaacgtggatctgggtctaattcctacattacaatccttaa 5473217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 35035088 - 35035172
Alignment:
Q  154 atgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaatt 238  Q
    ||||| |||||||| |||| || ||||||||||||||  ||||||||||||||||||| |  |||||||||| ||||||||||||    
T  35035088 atgtgagacaaataacaaattataaacaacttcaaaatcaacttcaacacccaccctcgcgtctagcgtgggcctaggtccaatt 35035172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 8745861 - 8745978
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    |||||||| |||||||||||||||||||||| ||||| |||||| ||||  | |  | |||||||||||| || |||| |||||||||||  | |||| |    
T  8745861 tgttaaatgagcttggatctcatcccaaaagttagcttaaaggatgaggatactcgaacatatttatacactcaacagtccgggaacctgtacaatgtag 8745960  T
Q  160 gacaaataccaaactaca 177  Q
    |||| ||| |||||||||    
T  8745961 gacacataacaaactaca 8745978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 8745644 - 8745811
Alignment:
Q  59 ttgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtg 158  Q
    ||||||||| || |||||||||| || ||||| ||||| |||||| ||||| | | ||  ||||||| ||| || | ||||  ||||| ||||  ||||     
T  8745644 ttgttaaatgagtttggatctcaccctaaaagttagcttaaaggacgagggtactcaacaatatttagacactcaatagcctaggaacatgagtaatgta 8745743  T
Q  159 ggacaaataccaaactaca--aacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgg 224  Q
    ||| ||||| |||||||||  |||||||||||||| ||||| ||||| ||||||||  ||||||||||    
T  8745744 ggaaaaataacaaactacacaaacaacttcaaaaccaactttaacactcaccctcatgcctagcgtgg 8745811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 33804218 - 33804306
Alignment:
Q  171 aactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaacc 259  Q
    ||||||||||||||||||||| |||| |||||| ||||||||| | ||||||||  ||| ||||||||  ||||| |||||| ||||||    
T  33804218 aactacaaacaacttcaaaaccaactccaacactcaccctcacgcatagcgtggacctaagtccaattttcacattgcaatctttaacc 33804306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 41243214 - 41243332
Alignment:
Q  72 ttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaa 171  Q
    ||||||||||||||||||| |||||||| ||| ||||  | | ||| ||||||||| | || ||| || |  ||||| ||| || ||||||||||| |||    
T  41243214 ttggatctcatcccaaaagttagctcaacggatgaggttactcaagtatatttatagactccacaacctgaaaacctaagcaatatgggacaaataacaa 41243313  T
Q  172 actacaaacaacttcaaaa 190  Q
    |||||||||||| ||||||    
T  41243314 actacaaacaacgtcaaaa 41243332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 35035295 - 35035363
Alignment:
Q  144 aacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctca 212  Q
    ||||||||| |||||| ||||||| | ||||| ||||||||| ||||  ||||||||||| ||||||||    
T  35035295 aacctgagcaatgtggaacaaataactaactataaacaactttaaaattaacttcaacacacaccctca 35035363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 260
Target Start/End: Original strand, 43829597 - 43829797
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaa-cctgagcgatgtg 158  Q
    ||||||||  |||||||||| |||| ||||| |||||||||| | ||||  | | || |||||||||||| || |||| ||||||| ||||| | |||||    
T  43829597 tgttaaatgtgcttggatcttatcc-aaaagctagctcaaagaatgaggatactcaaacatatttatacactcaacagtccgggaatcctgaacaatgtg 43829695  T
Q  159 ggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaac 258  Q
    |||| |  | ||||||||||  ||||||||||| |||||||||||||||||||||  |||  ||||| ||   ||||| |||||||  ||||||||||||    
T  43829696 ggactagaaacaaactacaaggaacttcaaaaccaacttcaacacccaccctcacgtctaatgtgggcctgaatccaactcccacactgcaatccttaac 43829795  T
Q  259 cc 260  Q
    ||    
T  43829796 cc 43829797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 43829811 - 43829953
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    |||| ||| ||||| ||||||||||||| || |||||||| ||| ||||| | | |||||||||| |||| || ||   | |||||||||||| ||||||    
T  43829811 tgtttaatgagctttgatctcatcccaacagctagctcaatggatgagggtactcaagcatatttctacactcaacgatctgggaacctgagcaatgtgg 43829910  T
Q  160 gacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    ||| |  | ||||||||||  ||||| ||||| ||||||||||    
T  43829911 gactagaaacaaactacaaggaacttgaaaaccaacttcaaca 43829953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 36201909 - 36201865
Alignment:
Q  156 gtgggacaaataccaaactacaaacaacttcaaaacaaacttcaa 200  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||||    
T  36201909 gtgggacaaataacaaactataaacaacttcaaaaccaacttcaa 36201865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 10645618 - 10645531
Alignment:
Q  115 aagcatatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    ||||||||||||||| || | | | |||||||||||||||||||||||||| | ||||||||||||||| ||||||| | ||||||||    
T  10645618 aagcatatttatacactcaataccgcgggaacctgagcgatgtgggacaaacaacaaactacaaacaacctcaaaaccagcttcaaca 10645531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 10645868 - 10645763
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    ||||||||| | || |||||||||  |||||||||||| ||||| ||||| | | || |||||||||||| || ||| ||||||||| ||||||| ||||    
T  10645868 tgttaaataggttttgatctcatcttaaaagatagctctaaggatgagggtactcaaacatatttatacactcaacaacccgggaacttgagcgacgtgg 10645769  T
Q  160 gacaaa 165  Q
    ||||||    
T  10645768 gacaaa 10645763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 370751 - 370672
Alignment:
Q  170 aaactacaaacaacttcaaaacaaacttcaa----cacccaccctcacacctagcgtgggtctaggtccaattcccacat 245  Q
    |||||||||||||||||||||| |||||||     ||||||||||| |||||| ||||| ||| ||||||||||||||||    
T  370751 aaactacaaacaacttcaaaaccaacttcattcagcacccaccctcgcacctaacgtggatctgggtccaattcccacat 370672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 3143014 - 3142872
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    ||||||||||| |||||| |||||||||||| || ||| ||| | || || | |  |||||||||||||| || ||||  | | ||| ||||||||||||    
T  3143014 tgttaaataagtttggatgtcatcccaaaagctaactcgaagaatgaaggtactcgagcatatttatacattcaacagttcagaaacttgagcgatgtgg 3142915  T
Q  160 gacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    ||| || |  |||||||| ||| ||||||||| ||||||||||    
T  3142914 gactaacaataaactacagacagcttcaaaaccaacttcaaca 3142872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 203
Target Start/End: Complemental strand, 3371723 - 3371579
Alignment:
Q  58 tttgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgt 157  Q
    |||||||||| |||||||||||||||||||||| || |||||| || ||||| | | |||||| | |||||| || ||||  | |||||| |||| || |    
T  3371723 tttgttaaatgagcttggatctcatcccaaaagctacctcaaaagatgagggtactcaagcatgtgtatacactcaacagttc-ggaacccgagcaatat 3371625  T
Q  158 gggacaaataccaaactacaaacaacttcaaaacaaacttcaacac 203  Q
    | ||| |  | ||||||| |||||||| |||||| |||||||||||    
T  3371624 gagaccagaaacaaactataaacaactacaaaaccaacttcaacac 3371579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 30602404 - 30602336
Alignment:
Q  134 acagcccgggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    ||||||||| ||| ||||  |||||  ||||||| ||||||||||||||||||||||| ||||||||||    
T  30602404 acagcccggaaacttgagtaatgtgaaacaaataacaaactacaaacaacttcaaaaccaacttcaaca 30602336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 48957854 - 48957755
Alignment:
Q  144 aacctgagcgatgtgggacaaataccaaactacaaa-caacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattccca 242  Q
    ||||||||| || || |||||||| ||||||||||| ||| |||||||| ||||||||||| |||| |||  ||||||||| | || |||| ||||||||    
T  48957854 aacctgagcaatatgtgacaaataacaaactacaaaacaatttcaaaaccaacttcaacacacaccatcatgcctagcgtgtgcctgggtcaaattccca 48957755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 49293193 - 49293102
Alignment:
Q  169 caaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaaccc 260  Q
    ||||||| ||| || |||||||| ||||||||||| |||||||||  ||| | ||||| |  ||||||||||||||| || |||||||||||    
T  49293193 caaactataaataaattcaaaaccaacttcaacactcaccctcacgtctatcatgggtttgagtccaattcccacattgcgatccttaaccc 49293102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 10645761 - 10645695
Alignment:
Q  193 aacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaacc 259  Q
    ||||||||||||||||||||| ||||||||||| ||  || |||||||||||| | |||| ||||||    
T  10645761 aacttcaacacccaccctcacgcctagcgtgggcctgagtacaattcccacattggaatctttaacc 10645695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 32968548 - 32968612
Alignment:
Q  148 tgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaacacccaccctca 212  Q
    ||||| |||||| ||||||| |||| ||| |||||||||||||| || ||||| |||||||||||    
T  32968548 tgagcaatgtggtacaaataacaaattacgaacaacttcaaaactaaattcaaaacccaccctca 32968612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 49293072 - 49292960
Alignment:
Q  76 atctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaaacta 175  Q
    |||||||| |||||| |||||||| ||| ||||| ||| ||  ||||||||||| || | ||   ||||| |||||| ||||||||| |  | |||||||    
T  49293072 atctcatctcaaaagctagctcaagggacgagggtattcaaaaatatttatacactcaatagtttgggaatctgagcaatgtgggactagaaacaaacta 49292973  T
Q  176 caaacaacttcaa 188  Q
    |||||||||||||    
T  49292972 caaacaacttcaa 49292960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 28843432 - 28843519
Alignment:
Q  115 aagcatatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    ||||||||||||||| || || | |||  ||| |||||||||||  || || | ||||||||||||||||||||||  ||||||||||    
T  28843432 aagcatatttatacactcaacggtccgaaaacttgagcgatgtgaaactaaaaacaaactacaaacaacttcaaaatcaacttcaaca 28843519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 30602553 - 30602487
Alignment:
Q  193 aacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaacc 259  Q
    |||||||| || ||||||||| ||||||||||| || | ||||||| ||| || |||||||||||||    
T  30602553 aacttcaaaactcaccctcactcctagcgtgggcctggatccaatttccaaattgcaatccttaacc 30602487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 35536786 - 35536929
Alignment:
Q  76 atctcatcccaaaagatagctcaaaggaggagggga-ttgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaaact 174  Q
    ||||||||||||||| || |||||| || ||||  | ||||| |||||||||||| || ||||   | |||||| ||  |||||| || || | ||||||    
T  35536786 atctcatcccaaaagttaactcaaatgatgaggatacttgaa-catatttatacattcaacagtttgagaacctaagtaatgtggaactaacaacaaact 35536884  T
Q  175 acaaacaacttcaaaacaaacttcaacacccaccctcacacctag 219  Q
    || |||||||| ||||| |||||||| || ||||||||| |||||    
T  35536885 accaacaactttaaaacgaacttcaatactcaccctcacgcctag 35536929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 22482 - 22340
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgg 159  Q
    ||||| ||| |||||| |||||||||||||| ||  |||||||| || || | | ||||||||||||||| |  ||| ||||||||||| ||||||||||    
T  22482 tgttatatacgcttggttctcatcccaaaagctaattcaaaggatgaaggtactcaagcatatttatacactgaacatcccgggaacctaagcgatgtgg 22383  T
Q  160 gacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    ||| |  | ||||||| |||||| || ||||||||||| ||||    
T  22382 gactagcaacaaactagaaacaatttaaaaacaaactttaaca 22340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 10742315 - 10742173
Alignment:
Q  72 ttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccggg-aacctgagcgatgtgggacaaatacca 170  Q
    ||||||||||||||||||| ||  ||||| ||  |||| |   || |||||||||||| || ||| | |||| ||||||| | |||||||| ||||| ||    
T  10742315 ttggatctcatcccaaaagctaaatcaaatgattagggtacccaaacatatttatacattcaacaactcggggaacctgaacaatgtgggataaataaca 10742216  T
Q  171 aactacaaacaacttcaaaacaaacttcaacacccaccctcac 213  Q
    || |||||||||||||||||| ||||||||||| |||||||||    
T  10742215 aaatacaaacaacttcaaaactaacttcaacactcaccctcac 10742173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 8535599 - 8535688
Alignment:
Q  113 tgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    ||||||||||||||||| || || || | ||||| ||||| | ||||||| || | ||||||| |||||| |||||||| ||||||||||    
T  8535599 tgaagcatatttatacactcaacggctctggaacatgagcaacgtgggactaaaaacaaactataaacaaattcaaaaccaacttcaaca 8535688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 33104719 - 33104648
Alignment:
Q  60 tgttaaataagcttggatctcatcccaaaagatagctcaaa--ggaggaggggattgaagcatatttataca 129  Q
    ||||||||| | ||||||||||||||||||  ||| |||||  ||| ||||| ||| |||||||||||||||    
T  33104719 tgttaaataggtttggatctcatcccaaaaattagatcaaattggatgagggtattcaagcatatttataca 33104648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 4665 - 4595
Alignment:
Q  169 caaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattc 239  Q
    ||||||||||||||||||||||| |||||||||| | |||||||  | |||||||||||| ||||||||||    
T  4665 caaactacaaacaacttcaaaaccaacttcaacatcaaccctcatgcttagcgtgggtctgggtccaattc 4595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 4022 - 4068
Alignment:
Q  174 tacaaacaacttcaaaacaaacttcaacacccaccctcacacctagc 220  Q
    ||||||||||||||||||  | |||||||||||||||||| ||||||    
T  4022 tacaaacaacttcaaaacctatttcaacacccaccctcacgcctagc 4068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 30525497 - 30525347
Alignment:
Q  72 ttggatctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaa 171  Q
    ||||||||||||| ||||| ||||||||| || || || | | || |||||||||||| || | ||| | ||||||||| | |||| ||||||||| |||    
T  30525497 ttggatctcatccaaaaaggtagctcaaaagatgaaggtactcaaacatatttatacactcaatagctcaggaacctgaacaatgt-ggacaaataacaa 30525399  T
Q  172 actacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgg 224  Q
    |||||  ||||||||||||| ||||||| |||| || |||||  |||||||||    
T  30525398 actac-gacaacttcaaaacgaacttcatcacctactctcacgtctagcgtgg 30525347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 42160401 - 42160312
Alignment:
Q  169 caaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatcgcaatccttaac 258  Q
    ||||||| ||||||||| ||||| ||||||||||||||||||||| | || ||||||| |  ||| |||||||||||  ||||| |||||    
T  42160401 caaactataaacaactttaaaaccaacttcaacacccaccctcacgcttatcgtgggtttgagtctaattcccacattacaatctttaac 42160312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 12704226 - 12704173
Alignment:
Q  193 aacttcaacacccaccctcacacctagcgtgggtctaggtccaattcccacatc 246  Q
    ||||||||||  ||||||||| ||||||||||| || |||||||||||||||||    
T  12704226 aacttcaacattcaccctcacgcctagcgtgggcctcggtccaattcccacatc 12704173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 27461290 - 27461242
Alignment:
Q  154 atgtgggacaaataccaaactacaaacaacttcaaaacaaacttcaaca 202  Q
    |||||||||| ||| ||||||||| ||||||||||||| ||||||||||    
T  27461290 atgtgggacagataacaaactacatacaacttcaaaaccaacttcaaca 27461242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 42160518 - 42160477
Alignment:
Q  59 ttgttaaataagcttggatctcatcccaaaagatagctcaaa 100  Q
    ||||||||| || ||||||||||||||||||| |||||||||    
T  42160518 ttgttaaatgagtttggatctcatcccaaaagttagctcaaa 42160477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 12704259 - 12704219
Alignment:
Q  148 tgagcgatgtgggacaaataccaaactacaaacaacttcaa 188  Q
    ||||||||||||||| || | ||||||||||||||||||||    
T  12704259 tgagcgatgtgggactaacaacaaactacaaacaacttcaa 12704219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 8088 - 8015
Alignment:
Q  169 caaactacaaacaacttcaaaacaaacttcaacacccaccctcacacctagcgtgggtctaggtccaattccca 242  Q
    |||||||| |||||||||||||| |||||||||||  || ||||  | |||||||||||| ||| |||||||||    
T  8088 caaactaccaacaacttcaaaaccaacttcaacacgtactctcatgcttagcgtgggtctgggttcaattccca 8015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 949 - 1061
Alignment:
Q  76 atctcatcccaaaagatagctcaaaggaggaggggattgaagcatatttatacaatcgacagcccgggaacctgagcgatgtgggacaaataccaaacta 175  Q
    ||||||||||||||| |  ||||||||| ||||  | | || |||||||||||| || ||| ||   || |||||||||| || ||| || | |||||||    
T  949 atctcatcccaaaagctcactcaaaggatgaggatactcaaacatatttatacattcaacaacctatgatcctgagcgatatgagactaacaacaaacta 1048  T
Q  176 caaacaacttcaa 188  Q
    |||||||||||||    
T  1049 caaacaacttcaa 1061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University