View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_high_4 (Length: 526)
Name: NF20964_high_4
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 35502828 - 35503093
Alignment:
| Q |
19 |
aaactagtttagctaagttttctatgttttcatttgtaaagatggacgcaactttctatccttcatttgtttgttaagtgttagattcacatatttgagc |
118 |
Q |
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| T |
35502828 |
aaactagtttagccaagttttctatgttttcatttgtaaagatggacgcaactttctatccttcatttgtt-gttaagtgttagattcacacatttgagc |
35502926 |
T |
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| Q |
119 |
atggaaaagcgcaaataatgtctttaataactagcaagtacgcttcatctttctgccccattttatttagtttgtaattttgaaacaaagttggatcaaa |
218 |
Q |
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| T |
35502927 |
atggaaaagcgcaaataatgtctttgataactagcaattacgcttcatctttctgccccattttatttagtttgtaattttgaaacaaagttggatcaaa |
35503026 |
T |
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| Q |
219 |
aataaattgaaactgtaaaattaaaaatgggtgcaacaaacaccacttattacatctaagaaaaaca |
285 |
Q |
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| T |
35503027 |
aataaattgaaactgtaaaattaaaaatcggtgcaacaaacaccacttattacatctaagaaaaaca |
35503093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 350 - 511
Target Start/End: Original strand, 35503096 - 35503257
Alignment:
| Q |
350 |
attcattgacctattttatttaaaaagaaaaattgcactaacagaatttggttacaacaagagcttgaaaatgagggttctttttagagtaaactacatt |
449 |
Q |
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| T |
35503096 |
attcattgatctattttatttaaaaagaaaaattgcactaacagaatttggttacaacaagagcttgaaaatgagggttctttttagagtaaactacatt |
35503195 |
T |
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| Q |
450 |
ctctcatcttttgtgttaaaatatacattttcttatctatatattggaaattattacactat |
511 |
Q |
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| T |
35503196 |
ctctcatcttttgtgttaaaatatacattttcttatctatatattgcaaattattacactat |
35503257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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