View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_high_5 (Length: 464)
Name: NF20964_high_5
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 32086545 - 32086110
Alignment:
| Q |
18 |
aaggttgcatcagatagtgaataaccaattctattagctatcaacgcctgatacnnnnnnntggattgttagattcttatcttagttacttgaattttgt |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
32086545 |
aaggttgcatcagatagtgaataaccaattatattagctatcaatgcctgatacaaaaaaatggattgttagattcttatcttagttatttgaattttgt |
32086446 |
T |
|
| Q |
118 |
tactgcaaatatagtagtatgtatttcctgattaattgaagtaattccagcattttgaaatcaagaaagaatctaaatttcattatctttttccttctta |
217 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32086445 |
tacggcaaatatagtagtatgtattttctgattaattgaagtaattccagcattttgaaatcaagaaagaatctaaatttcattatctttttccttctta |
32086346 |
T |
|
| Q |
218 |
ggaggttgctagtccttgaactattgcaaatttacccagttcctaacactttggtgttttcatcgggctaatccaaaaactacctgttcgaaagccacag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32086345 |
ggaggttgctagtccttgaactattgcaaatttacccagttcctaacactttggtgttttcatcgggctaatccaaaaactacatgttcgaaagccacag |
32086246 |
T |
|
| Q |
318 |
ccgataaaatggaagaagccattagcaaactcattactgatcaatttacccttgttgaaatccaaactctcccgacctccctaattgatgacattctcca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32086245 |
ccgataaaatggaagaagccattagcaaactcattactgatcaatttacccttgttgaaatccaaactctcccggcctccctaattgatgacattctcca |
32086146 |
T |
|
| Q |
418 |
caagttagcctcccttgacatacccattctctctgt |
453 |
Q |
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| T |
32086145 |
caagttagcctcccttgacatacccactctctctgt |
32086110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 152 - 451
Target Start/End: Complemental strand, 32084948 - 32084647
Alignment:
| Q |
152 |
attgaagtaattccagcattttgaaatcaagaaagaatctaaatttcattatctttttccttcttaggaggttgc--tagtccttgaactattgcaaatt |
249 |
Q |
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||||| || ||||||||||||| |||||||| |||| | |||| ||||||||| |||||||||||||||||| ||| ||| | |||| ||||||| |
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| T |
32084948 |
attgatgtgattccagcattttcaaatcaagcaagacttaaaatctcattatctatttccttcttaggaggttatattagccctctagctatagcaaatt |
32084849 |
T |
|
| Q |
250 |
tacccagttcctaacactttggtgttttcatcgggctaatccaaaaactacctgttcgaaagccacagccgataaaatggaagaagccattagcaaactc |
349 |
Q |
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||| |||||||||| |||||||| ||||||||| ||||||| ||||||| |||| ||| |||| || ||||||||||||||||||||||||||||| |
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| T |
32084848 |
tactcagttcctaatactttggtattttcatcgagctaatctggaaactactcgttcaaaatccaccgctaataaaatggaagaagccattagcaaactc |
32084749 |
T |
|
| Q |
350 |
attactgatcaatttacccttgttgaaatccaaactctcccgacctccctaattgatgacattctccacaagttagcctcccttgacatacccattctct |
449 |
Q |
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| ||| |||||| ||||||| ||||| ||||||||| || ||||| |||||| |||||||||||||| ||||| |||||||| |||||||||| || |
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| T |
32084748 |
actaccaatcaatccacccttggtgaaacccaaactcttacggcctccaaaattgacgacattctccacaaattagcgtcccttgaaatacccattccct |
32084649 |
T |
|
| Q |
450 |
ct |
451 |
Q |
| |
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|| |
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|
| T |
32084648 |
ct |
32084647 |
T |
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