View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_low_10 (Length: 360)
Name: NF20964_low_10
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 52910653 - 52910991
Alignment:
| Q |
16 |
catggtctccgtgatatatcatcagtaacta---tgcttcatatttgtagatgttataattttcctagtgtttactattcttgtttaacaaaatgaaaaa |
112 |
Q |
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| T |
52910653 |
catggtccccctgatatatcatcaataactaggatgcttcatatttgtagatattataattttcctagtgattactattcttgtttaacaaaatgagaaa |
52910752 |
T |
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| Q |
113 |
gttatgattctggggttagtaacgcaagagttttcagccttgcagagacactatgcagtattgcaggcattagctctagaagaggatgatattcctgaaa |
212 |
Q |
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| T |
52910753 |
gttatgattctggggttagtaacgcaagagttttcagccttgcagagacactatgcagtattgcaggcattagctctggaagaggatgatattcccgaaa |
52910852 |
T |
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| Q |
213 |
tcaaagatgaaacgttacctgatgaggaaggcttttccaggtaagcacaaggttttgttgatgtaattaatattttattgtttgattttcagactgtgac |
312 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52910853 |
tcaaagatgaaacattacctgatgaggaaggcttgtccaggtaagcacaaggttttgttgatgtaattaatattttattgtttgattttcagactgtgta |
52910952 |
T |
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| Q |
313 |
cagagatggaagaaattctaccttttttattagtattat |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
52910953 |
cagagatggaagaaattctaccttttttattagtattat |
52910991 |
T |
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