View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_low_12 (Length: 338)
Name: NF20964_low_12
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 26306077 - 26306216
Alignment:
| Q |
1 |
aacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaacttctccaccttttgtttccatgctt |
100 |
Q |
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| T |
26306077 |
aacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaacttctccaccttttgtttccatgctt |
26306176 |
T |
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| Q |
101 |
gtttttgatgaacttgttttgttgttatctttgctgtaat |
140 |
Q |
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| T |
26306177 |
gtttttgatgaacttgttttgttgttatctttgctgtaat |
26306216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 26306367 - 26306399
Alignment:
| Q |
289 |
gaaaaacaactaacatggaaaaacccaaaagag |
321 |
Q |
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| T |
26306367 |
gaaaaacaactaacatggaaaaacccaaaagag |
26306399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 781476 - 781550
Alignment:
| Q |
1 |
aacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaac |
75 |
Q |
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| T |
781476 |
aacacgaaagagatgaggctgttctgaatgaccacgcatgtgactaaggaagtacattatatgaagcattctaac |
781550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 46209354 - 46209455
Alignment:
| Q |
1 |
aacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaacttctccaccttttgtttccatgctt |
100 |
Q |
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||||| ||||||| || |||||||||| ||||||||||| |||| ||| |||||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
46209354 |
aacactaatgagacgataatgttctgcaaaaccacccatgtagctaaataagcagattatgtgaagccttctaactt---cacactttgcttccatgctt |
46209450 |
T |
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| Q |
101 |
gtttt |
105 |
Q |
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||||| |
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| T |
46209451 |
gtttt |
46209455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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