View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_low_13 (Length: 336)
Name: NF20964_low_13
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 9387612 - 9387305
Alignment:
| Q |
17 |
aaatagaactcaacacacaaacatatgcataatcatagatttagcctcatcttgctaaatcaaaatcttattataaacataaatattagatattagatac |
116 |
Q |
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| T |
9387612 |
aaatagaactcaacacacaaacatatacataatcgtagatttagcctcatcttgctaaatcaaaaccttattataaacataaatattagatattagatac |
9387513 |
T |
|
| Q |
117 |
a--gtacaattcttaataattttacaataatataatagaagaaacaacatcacataatcaagcaacaggtttaaaggaagtaagattcttcaaatgaagc |
214 |
Q |
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| T |
9387512 |
acagtacaattcataataattttacaataatataatagaagaaacaacatcacataatcaagcaacaggtttaaaggaagtaagattcttcaaatgaagc |
9387413 |
T |
|
| Q |
215 |
caaggtttctcccaaacaagtgcttgataattcttcgtcgcagaaacatctttcgcagccaacacaagacgataattcgtaccagaaaccacttgtgtct |
314 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9387412 |
caaggtttctcccaaacaagtgcttcataattcttcgtcgcagaaacaactttcgcagccaacacaagacgataattcgtaccagaaaccacttgtgtct |
9387313 |
T |
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| Q |
315 |
cacctttg |
322 |
Q |
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|||||||| |
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| T |
9387312 |
cacctttg |
9387305 |
T |
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