View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_low_18 (Length: 287)
Name: NF20964_low_18
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 44788013 - 44787745
Alignment:
| Q |
10 |
ataattctcataattgtgttgttgataaattataaatagttgtaaaaggatgtgaatctttgtcatttaacttgtctcattgcaatgatttagtttagtt |
109 |
Q |
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| T |
44788013 |
ataattctcataattgtgttgttgataaattataaatagttgtaaaaggatgtgaatctttgtcatttaacttgtctcattgcaatgatttagtttagtt |
44787914 |
T |
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| Q |
110 |
gttttatttgtaaccttacatttcattcaaggtttattataaacatcaattacgtttgctattacattcaatgatttagt-----------ttagttgat |
198 |
Q |
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| T |
44787913 |
gttttatttgtaaccttacatttcattcaaggtttattataaacatcaattacgtttgctattacattcaataactttgtaaaatgtgaaattagttgat |
44787814 |
T |
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| Q |
199 |
tcagcattttaaggggatggagttgttcaactgatttgaggtagagttaaaagaattgaagaaattaaa |
267 |
Q |
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| T |
44787813 |
tcagcattttaaggggattgagtggttcaactaatttgaggtagagttaaaagaattgaagaaattaaa |
44787745 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 36681643 - 36681678
Alignment:
| Q |
26 |
tgttgttgataaattataaatagttgtaaaaggatg |
61 |
Q |
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| T |
36681643 |
tgttcttgataaattataaatagttgtaaaaggatg |
36681678 |
T |
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