View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_low_21 (Length: 277)
Name: NF20964_low_21
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 864017 - 863749
Alignment:
| Q |
1 |
ctgtcttcccataacaataccagttctgcacaca--aaaaataatttaaattattcatcacctaattaattaataaccagatctctgcacaagacgaaca |
98 |
Q |
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| T |
864017 |
ctgtcttcccataacaataccagttctgcacacacaaaaaaaaagttaaattattcatcacctaattaattaataaccagatctctgcacaagacgaaca |
863918 |
T |
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| Q |
99 |
tagtgaattaatcaaaccttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgtgtccatataga |
198 |
Q |
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| T |
863917 |
gagtgaattaatcaaaccttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgggtccatataga |
863818 |
T |
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| Q |
199 |
ccgttccaatcgatgaagtgaacacaacacgtcgcacttttgcttccgcagacgctataatcacattct |
267 |
Q |
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| T |
863817 |
ccgttccaatcgatgaagtgaaaacaacacgtcgcactttagcttccgcggacgctataatcacattct |
863749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 854182 - 854092
Alignment:
| Q |
107 |
taatcaaaccttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgtgtccatataga |
198 |
Q |
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| T |
854182 |
taatcaaaccttggtgttcttgcaatattctaaatcactccaatatgaatcat-aaccacaacaaccctacttgtatttgggtccaaataga |
854092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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