View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_low_26 (Length: 236)
Name: NF20964_low_26
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 4558915 - 4558723
Alignment:
| Q |
25 |
caataaactttttaatgaaaaattgttttccttctataacaaaaagtggtgacttgacaagtatgtatcaattattgtgttacatattccttagaatttg |
124 |
Q |
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| T |
4558915 |
caataaactttttaatgaaaaattgttttccttctataacaaaaagtggtgacttgataagtatgtatcaattattgtgttacatattacttagaatttg |
4558816 |
T |
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| Q |
125 |
agtttgctttccttgtcttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttag |
217 |
Q |
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| T |
4558815 |
agtttgctttccttgacttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttag |
4558723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 4572660 - 4572568
Alignment:
| Q |
119 |
aatttgagtttgctttccttgtcttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcc |
212 |
Q |
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| T |
4572660 |
aatttgattttgctttccttgtcttttgtctct-atcttcttttccacaaatccaagaaacattggatttatctttattaaaacattggtttcc |
4572568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 4572788 - 4572706
Alignment:
| Q |
27 |
ataaactttttaatgaaaaattgttttccttctat-----aacaaaaagtggtgacttgacaagtatgtatcaattattgtgt |
104 |
Q |
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| T |
4572788 |
ataaactttttaatgaaaaattgttttccttctctcacgtaacaaaaagtggtgacttgactagtatgcatcaattattgtgt |
4572706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 4587310 - 4587258
Alignment:
| Q |
27 |
ataaactttttaatgaaaaattgttttccttctataacaaaaagtggtgactt |
79 |
Q |
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| T |
4587310 |
ataaactttttaatgaaaaattgatttccttttataacaaaaagtggtcactt |
4587258 |
T |
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