View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20964_low_27 (Length: 217)

Name: NF20964_low_27
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20964_low_27
NF20964_low_27
[»] chr5 (3 HSPs)
chr5 (71-202)||(17026714-17026844)
chr5 (106-190)||(24840876-24840961)
chr5 (102-159)||(19330761-19330817)
[»] chr1 (2 HSPs)
chr1 (102-198)||(23222610-23222706)
chr1 (103-167)||(14396861-14396924)
[»] chr2 (4 HSPs)
chr2 (102-194)||(9503754-9503847)
chr2 (102-194)||(9515120-9515213)
chr2 (102-202)||(28279203-28279304)
chr2 (102-197)||(22389617-22389714)
[»] chr3 (3 HSPs)
chr3 (102-172)||(11520255-11520326)
chr3 (102-198)||(14426725-14426821)
chr3 (102-166)||(8403035-8403098)
[»] chr8 (4 HSPs)
chr8 (102-197)||(22895497-22895592)
chr8 (105-197)||(16053229-16053321)
chr8 (102-172)||(13082410-13082481)
chr8 (102-148)||(41510083-41510129)
[»] chr7 (2 HSPs)
chr7 (102-166)||(21470883-21470948)
chr7 (102-148)||(7955460-7955506)
[»] chr6 (2 HSPs)
chr6 (103-151)||(18388769-18388817)
chr6 (102-198)||(19742286-19742381)
[»] scaffold1429 (1 HSPs)
scaffold1429 (102-197)||(306-403)


Alignment Details
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 17026844 - 17026714
Alignment:
Q  71 gaataccaagttctattagtacccaaccccctaatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaagaaatcaaacagatataatc 170  Q
    ||||||||||||||||||||| || | |||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17026844 gaataccaagttctattagtatcccatccca-aatttcaaatcatgacaagtatttcactaacctatctaacttcaaaaagaaatcaaacagatataatc 17026746  T
Q  171 aatagtgttcataacttgtgacatgatgtaaa 202  Q
    ||||||||||||||||||||||||||||||||    
T  17026745 aatagtgttcataacttgtgacatgatgtaaa 17026714  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 24840961 - 24840876
Alignment:
Q  106 ttcaaatcatgacaagtatttcactaacctacctaacttcaaaaa-gaaatcaaacagatataatcaatagtgttcataacttgtg 190  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||| |||||| ||  ||||||||||||||    
T  24840961 ttcaaattatgacaagtctttcactaacctacctaactccaaaaaggaaatcaaacagatgtaatcactatggttcataacttgtg 24840876  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 19330817 - 19330761
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaagaaatcaaa 159  Q
    |||||||| |||||||||||||||||| ||| ||||||||| || |||||||||||||    
T  19330817 taatttcagatcatgacaagtatttcattaatctacctaac-tccaaaagaaatcaaa 19330761  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 23222706 - 23222610
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaagaaatcaaacagatataatcaatagtgttcataacttgtgacatgatg 198  Q
    ||||||||||| || ||||| | |||||||||||| |||||| ||||||||||||||||| |||||||||||||  ||||||| | |||||||||||    
T  23222706 taatttcaaattattacaagaagttcactaacctatctaactccaaaaagaaatcaaacatatataatcaataggtttcataagtcgtgacatgatg 23222610  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 14396924 - 14396861
Alignment:
Q  103 aatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaagaaatcaaacagatata 167  Q
    |||||||||| || |||||||||||||||| ||| ||||| || |||| |||||||||| |||||    
T  14396924 aatttcaaattatcacaagtatttcactaatctatctaac-tctaaaataaatcaaacatatata 14396861  T

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Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 9503847 - 9503754
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaa-gaaatcaaacagatataatcaatagtgttcataacttgtgacat 194  Q
    |||||| |||||||||||||||||||||||| ||| |||||| |||||| ||||||||||| |||| |||| | | ||||||||||||||||||    
T  9503847 taatttaaaatcatgacaagtatttcactaatctatctaactccaaaaaggaaatcaaacatatattatcactggggttcataacttgtgacat 9503754  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 9515213 - 9515120
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaa-gaaatcaaacagatataatcaatagtgttcataacttgtgacat 194  Q
    |||||| |||||||||||||||||||||||| ||| |||||| |||||| ||||||||||| |||| |||| | | ||||||||||||||||||    
T  9515213 taatttaaaatcatgacaagtatttcactaatctatctaactccaaaaaggaaatcaaacatatattatcactggggttcataacttgtgacat 9515120  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 28279203 - 28279304
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaa--gaaatcaaacagatataatcaatagtgttcataacttgtgacatgatgt 199  Q
    |||||||||| |||||||| |||||||||||||||  ||||  | ||||  ||||||||||| ||||||||||||| | ||| |||||||||||||||||    
T  28279203 taatttcaaaccatgacaaatatttcactaacctatttaacgccgaaaagggaaatcaaacatatataatcaatag-gatcaaaacttgtgacatgatgt 28279301  T
Q  200 aaa 202  Q
    |||    
T  28279302 aaa 28279304  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 22389617 - 22389714
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaagaaatcaaacagatataatca--atagtgttcataacttgtgacatgat 197  Q
    |||||||||| ||||  || ||||||||||| ||||||||||  ||||| ||| |||||| |||||||||  |||  ||||  |||||||||||||||    
T  22389617 taatttcaaaccatgttaattatttcactaatctacctaactcaaaaaataaagcaaacaaatataatcattataaggttcgaaacttgtgacatgat 22389714  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 11520326 - 11520255
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaa-agaaatcaaacagatataatcaa 172  Q
    ||||||| ||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||    
T  11520326 taatttctaatcatgacaagtatttcactaacctatctaactccaaaagggaaatcaaacagatataatcaa 11520255  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 14426821 - 14426725
Alignment:
Q  102 taatttcaaatcatgacaa-gtatttcactaacctacctaacttcaaaaagaaatcaaacagatataatcaatagtgttcataacttgtgacatgatg 198  Q
    |||||| ||| |||||||| |||||||||||| ||| |||||| |||||||||||| |||| |||||||| |||| || |||||||| ||||||||||    
T  14426821 taattttaaaccatgacaaagtatttcactaatctatctaactccaaaaagaaatc-aacatatataatccatagggtgcataacttatgacatgatg 14426725  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 8403035 - 8403098
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaagaaatcaaacagatat 166  Q
    |||||||||| ||||||| |||||||||||| ||| | ||| || ||||||||||||| ||||||    
T  8403035 taatttcaaaccatgacacgtatttcactaatctatcaaac-tccaaaagaaatcaaatagatat 8403098  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 22895497 - 22895592
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaagaaatcaaacagatataatcaatagtgttcataacttgtgacatgat 197  Q
    |||||||||| ||||||||||||||||||||  || |||||| ||||| ||||||||| |||  | |||| ||| | |||||||||||||||||||    
T  22895497 taatttcaaaccatgacaagtatttcactaagttatctaactccaaaaggaaatcaaatagaccttatcactagagctcataacttgtgacatgat 22895592  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 16053229 - 16053321
Alignment:
Q  105 tttcaaatcatgacaagtatttcactaacctacctaacttcaaaaagaaatcaaacagatataatcaatagtgttcataacttgtgacatgat 197  Q
    ||||||| | ||| |||||||||||||||||| |||  | ||||||||||| ||| |||||||||||  |  |||||||||||||||||||||    
T  16053229 tttcaaaccctgagaagtatttcactaacctatctatttccaaaaagaaataaaaaagatataatcagcaaggttcataacttgtgacatgat 16053321  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 13082410 - 13082481
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaa-agaaatcaaacagatataatcaa 172  Q
    |||||||||| ||||| || ||||||||||||||| |||||| |||||  ||||||||||||| ||||||||    
T  13082410 taatttcaaaccatgataaatatttcactaacctatctaactccaaaagggaaatcaaacagaaataatcaa 13082481  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 41510083 - 41510129
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaa 148  Q
    ||||||||||||||||||| ||||| ||||| ||| |||||||||||    
T  41510083 taatttcaaatcatgacaaatattttactaatctatctaacttcaaa 41510129  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 21470948 - 21470883
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaag-aaatcaaacagatat 166  Q
    |||||||||| ||||||||||||||||||||| || |||||| ||||| | |||||||||||||||    
T  21470948 taatttcaaaccatgacaagtatttcactaacttatctaactccaaaatgaaaatcaaacagatat 21470883  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 7955506 - 7955460
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaa 148  Q
    |||||| |||||||||||||||||||||||| ||| |||||| ||||    
T  7955506 taattttaaatcatgacaagtatttcactaatctatctaactccaaa 7955460  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 18388817 - 18388769
Alignment:
Q  103 aatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaag 151  Q
    ||||||||| |||||||||||| ||||||||||| |||||| |||||||    
T  18388817 aatttcaaaccatgacaagtatatcactaacctatctaactccaaaaag 18388769  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 19742381 - 19742286
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaagaaatcaaacagatataatcaatagtgttcataacttgtgacatgatg 198  Q
    |||||||||| ||| |||||||||||||| || || |||| ||| ||||||||  ||| |||||  || ||||| | ||||||||||||||||||||    
T  19742381 taatttcaaaccataacaagtatttcactgacgtatctaa-ttccaaaagaaaataaatagataagatgaatagggctcataacttgtgacatgatg 19742286  T

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Target: scaffold1429 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1429
Description:

Target: scaffold1429; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 306 - 403
Alignment:
Q  102 taatttcaaatcatgacaagtatttcactaacctacctaacttcaaaaagaaatcaaacagatataatca--atagtgttcataacttgtgacatgat 197  Q
    |||||||||| |||| ||| |||||||| || ||| ||||||  ||||| ||| |||||| |||||||||  |||  ||||| |||||||||||||||    
T  306 taatttcaaaccatgccaattatttcaccaatctatctaactaaaaaaataaagcaaacatatataatcattataaggttcaaaacttgtgacatgat 403  T

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