View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_low_5 (Length: 504)
Name: NF20964_low_5
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 299 - 486
Target Start/End: Original strand, 11103031 - 11103218
Alignment:
| Q |
299 |
gtatgtgcccaaatcatttttacttggggttacaaccacacaaacaaattggagaacataaagaattacacggttaatttgagacttacatagaaacaca |
398 |
Q |
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| T |
11103031 |
gtatgtgcccaaatcatttttacttggggttacaaccacacaaacaaattggagaacataaagaattacacggttaatttgagacttacatagaaacaca |
11103130 |
T |
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| Q |
399 |
tcatgatttattcaacatcttaaataatattaatataatttgtaaatgatctcctttcatgaatatagcatagtgaatactactaatc |
486 |
Q |
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| T |
11103131 |
tcatgatttattcaacatcttaaataatattaatataatttgtaaatgatctcctttcatgaatatagcatagtgaatactactaatc |
11103218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 11102878 - 11102939
Alignment:
| Q |
150 |
gatgaaagatacatattgaactaaactacaagatacaaaaatactcacctctatttaggcac |
211 |
Q |
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| T |
11102878 |
gatgaaagatacatattcaactaaactacaagatacaaaaatactcacctctatttaggcac |
11102939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 11102747 - 11102805
Alignment:
| Q |
20 |
atttaggggcaaattctaa-atattctagagtttgattgagtaccgatgtcttataagc |
77 |
Q |
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| T |
11102747 |
atttaggggcaaattcttagatattctagagtttgattgagtaccgatatcctataagc |
11102805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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