View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_low_6 (Length: 491)
Name: NF20964_low_6
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 14966750 - 14967024
Alignment:
| Q |
11 |
aatgaggacaggtggacttagtgtgtttcccctagactgatcattgtgattgttggtcgtttatctctttttctgtgtaattttgatcttttattcatgc |
110 |
Q |
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| T |
14966750 |
aatgaggacaggtggacttagtgcgttccccctagactgatcattgtgattgttggccgtttatctcttttt-tgtgtcattttgatcttttattcatgc |
14966848 |
T |
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| Q |
111 |
ttgcatatgaaatatcaagctttaaatttatgattttgtacgagagcataaaatatatttaagactgagagttcataagaaaacaaaaccatagatttaa |
210 |
Q |
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| T |
14966849 |
ttgcatatgaaatatcaagctttaaatttatgattttgtacgagagcataaaatatatttaagactgagagttcataagaaaacaaaaccatagatttaa |
14966948 |
T |
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| Q |
211 |
agtttgaaattcatatcgaaatatctgaaggatcaaaatgacttggnnnnnnngagaaataactaaattattacttcatt |
290 |
Q |
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| T |
14966949 |
agtttgaaattcatatcaaaatatgtgaaggatcaaaatgacttggaaaa----aaaaataactaaattattacttcatt |
14967024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 290 - 468
Target Start/End: Original strand, 14967901 - 14968082
Alignment:
| Q |
290 |
ttggtgtattaaaattagagtataatagagaaaaaatatctaaatatccgnnnnnnnnatttggtgttactattataaaacgacgtctaaaaaagacgag |
389 |
Q |
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| T |
14967901 |
ttggtggattaaaattagagtataatagagaaaaaatatctaaatatccgtttttctgatttggtgttactattataaaacgacatctaaaaaagacgag |
14968000 |
T |
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| Q |
390 |
gaagtatgtgaaattaagttaagggacattgagataaaaagaaaat---tatctaatttttataaatttgtttggagggttt |
468 |
Q |
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| T |
14968001 |
gaagtatgtgaaattaagttaagggacattgagataaaaaaaaaatatatatctaatttttataaatttgtttggagggttt |
14968082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 3347281 - 3347339
Alignment:
| Q |
163 |
atatatttaagactgagagttcataagaaaacaaaaccatagatttaaagtttgaaatt |
221 |
Q |
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| T |
3347281 |
atatatttaagaccgagagttcatgaaaaaagaaaagcatagacttaaagtttgaaatt |
3347339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 2303559 - 2303494
Alignment:
| Q |
159 |
taaaatatatttaagactgagagttcataagaaaacaaaaccatagatttaaagtttgaaattcata |
225 |
Q |
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| T |
2303559 |
taaaatatatttaagagtaagagtttataaagaaa-aaaatcatagatttaaaggttgaaattcata |
2303494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 2303178 - 2303114
Alignment:
| Q |
161 |
aaatatatttaagactgagagttcataagaaaacaaaaccatagatttaaagtttgaaattcata |
225 |
Q |
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|||||||||||||| |||||||| |||| ||| |||| | |||||| |||||||||||||||| |
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| T |
2303178 |
aaatatatttaagagtgagagtttataaagaaagaaaatcgtagattcgaagtttgaaattcata |
2303114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 1256328 - 1256292
Alignment:
| Q |
290 |
ttggtgtattaaaattagagtataatagagaaaaaat |
326 |
Q |
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| T |
1256328 |
ttggtggattaaaattagagtataatagggaaaaaat |
1256292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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