View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20964_low_8 (Length: 374)
Name: NF20964_low_8
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20964_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 97 - 356
Target Start/End: Complemental strand, 38403987 - 38403724
Alignment:
| Q |
97 |
atctagaattatttagagttgtcaatgtctcaattcaaaaatcttgaagtgctttaaatttggaaaaatgtagaaaatatctagaagcaaatttcaatca |
196 |
Q |
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| T |
38403987 |
atctagaattatttagagttgtcaatgactcaattcaaaaatcttgaagtgctttaaatttggaaaaatgtagaaaatatctagaagcaaatttcaatca |
38403888 |
T |
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| Q |
197 |
ggaatatcctaaagtctccttttctcttcctcagatgtatagctgatagg-catagctgatagg---tgaattgacatttggaatcatcttctgtttggg |
292 |
Q |
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| T |
38403887 |
ggaatatcctaaagtctccttttctcttcctaagaggcatagctgataggtgataactgatatgatatgaattgacatttggaatcatcttctgtttggg |
38403788 |
T |
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| Q |
293 |
actcctcctgaatcttcatgatattttaataagtctttgaccaaattttaactgatgttctctg |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38403787 |
actcctcctgaatcttcatgatattttaataagtctttgaccaaattttaactgatgttctctg |
38403724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 38404142 - 38404049
Alignment:
| Q |
1 |
ttacttttgtttattctcagctccgatgattagtgctctagtatttgacaactaaaaaataagatttagtatctatgtaatttatttatttttt |
94 |
Q |
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| T |
38404142 |
ttacttttgtttattctcagctccgatgattagtgctctagtatttgacaactaaaaaataagatttagtatctatgtaatttatttatttttt |
38404049 |
T |
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