View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20964_low_9 (Length: 364)

Name: NF20964_low_9
Description: NF20964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20964_low_9
NF20964_low_9
[»] chr3 (8 HSPs)
chr3 (241-343)||(24835068-24835170)
chr3 (244-317)||(20204893-20204966)
chr3 (241-317)||(16724871-16724947)
chr3 (246-317)||(18177746-18177817)
chr3 (245-317)||(22261736-22261808)
chr3 (245-317)||(22266691-22266763)
chr3 (246-313)||(35269852-35269919)
chr3 (20-78)||(24834990-24835048)
[»] chr2 (3 HSPs)
chr2 (240-317)||(14106062-14106139)
chr2 (242-317)||(44909799-44909874)
chr2 (244-317)||(43822044-43822117)
[»] chr1 (5 HSPs)
chr1 (243-317)||(9826454-9826528)
chr1 (244-317)||(31279278-31279351)
chr1 (246-317)||(4449635-4449706)
chr1 (243-317)||(9812058-9812132)
chr1 (243-314)||(9751435-9751505)
[»] chr6 (7 HSPs)
chr6 (244-317)||(24977771-24977844)
chr6 (244-317)||(12770773-12770846)
chr6 (244-317)||(24976340-24976413)
chr6 (246-317)||(12766760-12766831)
chr6 (246-317)||(3894855-3894926)
chr6 (244-317)||(12800105-12800178)
chr6 (263-318)||(12777047-12777102)
[»] chr5 (1 HSPs)
chr5 (244-317)||(40235003-40235076)
[»] chr4 (2 HSPs)
chr4 (244-317)||(39936155-39936228)
chr4 (245-317)||(28745642-28745714)
[»] scaffold0432 (1 HSPs)
scaffold0432 (243-317)||(5820-5894)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 241 - 343
Target Start/End: Original strand, 24835068 - 24835170
Alignment:
Q  241 aaatttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatggttgtgctatatttcttctaaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24835068 aaatttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatggttgtgctatattgcttctaaa 24835167  T
Q  341 aca 343  Q
    |||    
T  24835168 aca 24835170  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 20204966 - 20204893
Alignment:
Q  244 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20204966 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 20204893  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 16724871 - 16724947
Alignment:
Q  241 aaatttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16724871 aaatctatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 16724947  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 18177746 - 18177817
Alignment:
Q  246 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18177746 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 18177817  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 22261808 - 22261736
Alignment:
Q  245 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22261808 ttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactttgat 22261736  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 22266691 - 22266763
Alignment:
Q  245 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22266691 ttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactttgat 22266763  T

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Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 35269852 - 35269919
Alignment:
Q  246 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35269852 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgtgccactc 35269919  T

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Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 24834990 - 24835048
Alignment:
Q  20 tgaatgactatggataatggattggacctataataataaaatacactttacttattcat 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24834990 tgaatgactatggataatggattggacctataataataaaatacactttacttattcat 24835048  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 14106062 - 14106139
Alignment:
Q  240 aaaatttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14106062 aaaatttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 14106139  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 44909874 - 44909799
Alignment:
Q  242 aatttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44909874 aatttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 44909799  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 43822117 - 43822044
Alignment:
Q  244 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43822117 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 43822044  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 9826454 - 9826528
Alignment:
Q  243 atttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9826454 atttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 9826528  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 31279278 - 31279351
Alignment:
Q  244 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279278 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 31279351  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 4449635 - 4449706
Alignment:
Q  246 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4449635 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 4449706  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 9812058 - 9812132
Alignment:
Q  243 atttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9812058 atttatcagagcctggttttaatccagggacctatgggttatgggcccaccacgcttccgctgcgccactctgat 9812132  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 9751435 - 9751505
Alignment:
Q  243 atttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactct 314  Q
    |||||| |||| ||| |||||||||||||| ||||| ||||| | |||||||||||||| ||||||||||||    
T  9751435 atttattagagtctgatttcgatccagggatctgtgagttatagacccaccacgcttcc-ctgcgccactct 9751505  T

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Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 24977771 - 24977844
Alignment:
Q  244 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24977771 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 24977844  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 12770773 - 12770846
Alignment:
Q  244 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12770773 tttatcagagcctggtttcaatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 12770846  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 24976340 - 24976413
Alignment:
Q  244 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24976340 tttatcaaagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 24976413  T

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Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 12766760 - 12766831
Alignment:
Q  246 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  12766760 tatcagagcctggtttcgatccagggacctatgggttatgggcccaccatgcttccgctgcgccactctgat 12766831  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 3894855 - 3894926
Alignment:
Q  246 tatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3894855 tatcagagtctggtttctatccaaggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 3894926  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 12800105 - 12800178
Alignment:
Q  244 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  12800105 tttattagagcctggtttcgatccagggacctgtaggttatgggcccaccacgcttccgccgcaccactctgat 12800178  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 12777047 - 12777102
Alignment:
Q  263 gatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12777047 gatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgatg 12777102  T

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Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 40235003 - 40235076
Alignment:
Q  244 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40235003 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 40235076  T

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Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 39936228 - 39936155
Alignment:
Q  244 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39936228 tttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 39936155  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 28745642 - 28745714
Alignment:
Q  245 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28745642 ttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 28745714  T

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Target: scaffold0432 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 5820 - 5894
Alignment:
Q  243 atttatcagagcctggtttcgatccagggacctgtgggttatgggcccaccacgcttccgctgcgccactctgat 317  Q
    |||||| ||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||    
T  5820 atttattagagcctagtttcgatccaggaacctatgggttatggacccaccacgcttccgctgcgtcactctgat 5894  T

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