View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20965_high_10 (Length: 280)

Name: NF20965_high_10
Description: NF20965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20965_high_10
NF20965_high_10
[»] chr4 (3 HSPs)
chr4 (11-280)||(23438416-23438679)
chr4 (34-280)||(23430387-23430621)
chr4 (75-278)||(23445216-23445412)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 23438416 - 23438679
Alignment:
Q  11 agcagagaatcatggttggcgtccattcatttttcttctatatataaagcaagaattagacattcattactcacatccatttttcttcaataataaagct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23438416 agcagagaatcatggttggcgtccattcatttttcttctatatataaagcaagaattagacattcattactcacatccatttttcttcaataataaagct 23438515  T
Q  111 tatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttctaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23438516 tatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttctaaa 23438615  T
Q  211 gaggttgagactcttcccacgacttactcttctacttctacccatcttcacctgacattgccttccactc 280  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  23438616 gaggttgagactcttcccacgacttact------cttctacccatcttcacctgacattgccttccactc 23438679  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 280
Target Start/End: Original strand, 23430387 - 23430621
Alignment:
Q  34 cattcatttttcttctatatataaagcaagaattagacattcattactcacatccatttttcttcaataataaagcttatttttactttctcttgcataa 133  Q
    |||||||||||| |||||||||||| | ||||| | ||||| ||||     ||||||||| |||| | ||||||||||||| |||||||||||||||||     
T  23430387 cattcatttttcatctatatataaaacgagaatcatacattaattaa----atccatttt-cttctacaataaagcttattattactttctcttgcatac 23430481  T
Q  134 gaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttctaaagaggttgagactcttcccacgac 233  Q
     ||||||||| ||||||||| |||||||  | ||||||||||||||||| ||  |||| || | || ||||||| |||||||| ||| ||||||||| ||    
T  23430482 -aaaaatgtccaaagtcatgaccttagcgctgctcatgctcctagttgatactcttcctaccatggcgctttctgaagaggttaagaatcttcccaccac 23430580  T
Q  234 ttactcttctacttctacccatcttcacctgacattgccttccactc 280  Q
    |||||      || | |||||| ||||||||||||||||||||||||    
T  23430581 ttact------ctccaacccatgttcacctgacattgccttccactc 23430621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 278
Target Start/End: Original strand, 23445216 - 23445412
Alignment:
Q  75 cattactcacatccatttttcttcaataataaagcttatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctc 174  Q
    ||||| || |||| |||||||||| | |||||| ||||||||||||||||||||||||  |||| |||| |||| |||| ||||||  || ||| | |||    
T  23445216 cattagtctcatcaatttttcttctacaataaaacttatttttactttctcttgcatatcaaaa-tgtccaaagccatgaccttagtgttgctcctcctc 23445314  T
Q  175 ctagttgagacaattcccactacggtgctttctaaagaggttgagactcttcccacgacttactcttctacttctacccatcttcacctgacattgcctt 274  Q
    ||||||  | |  ||  |||||||||||||||| |||||||||||||||||||| | |||||||      || |||||||| ||||| ||||||||||||    
T  23445315 ctagttttgtctcttttcactacggtgctttctgaagaggttgagactcttcccgccacttact------ctcctacccatattcacatgacattgcctt 23445408  T

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