View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20965_high_11 (Length: 266)
Name: NF20965_high_11
Description: NF20965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20965_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 54776143 - 54776393
Alignment:
| Q |
1 |
aagaagaagaagttggtacgttacatctgctgtgcattttcataaagattcttctatagactctcgagttcttttgttcacaaactttactttatttgat |
100 |
Q |
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| T |
54776143 |
aagaagaagaagttggtacgttacatctgctgtgcattttcataaagattcttctatagactctcgagttcttttgttcacaaactttactttatttgat |
54776242 |
T |
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| Q |
101 |
ttgtgcttacagttccgcttccactggtgaagtgataattgtgtttgttacgtgaccttcaaaaacaaagagttgtaaagttggaggctttctatattac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54776243 |
ttgtgcttacagttccgcttccactggtgaagtgataattgcgtttgttacgtgaccttcaaaaacaaggagttgtaaagttggaggctttctatattac |
54776342 |
T |
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| Q |
201 |
atgccctgcagcattcacctatcttctaaagagagtattgttattgttatt |
251 |
Q |
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| T |
54776343 |
atgccctgcagcattcacctatcttctaaagagagtattgttattgttatt |
54776393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 5329980 - 5330169
Alignment:
| Q |
1 |
aagaagaagaagttggtacgttacatctgctgtgcattttcataaagattcttctatagactctcgagttcttttgttcacaaactttactttatttgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329980 |
aagaagaagaagttggtacgttacatctgctgtgcattttcataaagattcttctatagactctcgagttcttttgttcacaaactttactttatttgat |
5330079 |
T |
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| Q |
101 |
ttgtgcttacagttccgcttccactggtgaagtgataattgtgtttgttacgtgaccttcaaaaacaaagagttgtaaagttggaggctt |
190 |
Q |
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| T |
5330080 |
ttgtgcttacagttccgcttccactggtgaagtgataattgtgtttgttacgtgaccttcaaaaacaaagagttgtaaagttggaggctt |
5330169 |
T |
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