View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20965_high_12 (Length: 262)

Name: NF20965_high_12
Description: NF20965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20965_high_12
NF20965_high_12
[»] chr6 (8 HSPs)
chr6 (99-206)||(6271688-6271795)
chr6 (99-190)||(34516304-34516395)
chr6 (135-184)||(13201433-13201482)
chr6 (99-184)||(28482673-28482758)
chr6 (99-184)||(29795088-29795173)
chr6 (204-245)||(6271637-6271677)
chr6 (103-184)||(24167226-24167307)
chr6 (99-200)||(33858846-33858947)
[»] chr2 (7 HSPs)
chr2 (99-204)||(31642463-31642568)
chr2 (99-190)||(29078415-29078506)
chr2 (99-184)||(3601817-3601902)
chr2 (99-180)||(6191835-6191916)
chr2 (99-179)||(13481467-13481547)
chr2 (99-200)||(925682-925783)
chr2 (104-165)||(37660668-37660728)
[»] chr4 (15 HSPs)
chr4 (99-206)||(36119498-36119605)
chr4 (99-200)||(23544136-23544237)
chr4 (99-190)||(10310374-10310465)
chr4 (99-184)||(29696413-29696498)
chr4 (99-189)||(54681847-54681937)
chr4 (99-189)||(50303476-50303566)
chr4 (108-184)||(31518411-31518487)
chr4 (103-200)||(48035450-48035547)
chr4 (135-184)||(53401617-53401666)
chr4 (99-184)||(55961238-55961323)
chr4 (105-200)||(46307359-46307454)
chr4 (99-180)||(7138787-7138868)
chr4 (148-184)||(53849371-53849407)
chr4 (108-153)||(523380-523424)
chr4 (99-184)||(4729322-4729407)
[»] chr7 (14 HSPs)
chr7 (99-184)||(39878647-39878732)
chr7 (99-189)||(33055471-33055561)
chr7 (99-200)||(22491686-22491787)
chr7 (99-181)||(45225691-45225773)
chr7 (99-165)||(45223659-45223725)
chr7 (101-182)||(3765686-3765767)
chr7 (103-180)||(41085027-41085104)
chr7 (103-200)||(25750152-25750250)
chr7 (99-157)||(41816284-41816342)
chr7 (135-184)||(7345093-7345142)
chr7 (103-184)||(44623879-44623959)
chr7 (144-184)||(30514634-30514674)
chr7 (144-184)||(31206002-31206042)
chr7 (103-163)||(33698507-33698566)
[»] chr5 (10 HSPs)
chr5 (99-245)||(4921398-4921541)
chr5 (99-245)||(41697349-41697492)
chr5 (99-180)||(19555203-19555284)
chr5 (99-178)||(43229216-43229295)
chr5 (99-180)||(39144469-39144550)
chr5 (105-182)||(4048786-4048862)
chr5 (99-182)||(20654709-20654792)
chr5 (144-187)||(40166696-40166739)
chr5 (99-159)||(23153642-23153701)
chr5 (145-185)||(30571487-30571527)
[»] chr3 (10 HSPs)
chr3 (103-189)||(10723667-10723753)
chr3 (104-182)||(6955872-6955949)
chr3 (99-184)||(34706429-34706514)
chr3 (99-179)||(28850028-28850108)
chr3 (99-157)||(9020637-9020695)
chr3 (99-184)||(31543462-31543547)
chr3 (99-178)||(7330886-7330965)
chr3 (99-178)||(45774593-45774672)
chr3 (104-182)||(41727464-41727541)
chr3 (103-184)||(12406102-12406182)
[»] scaffold0392 (1 HSPs)
scaffold0392 (99-189)||(831-921)
[»] chr8 (13 HSPs)
chr8 (99-182)||(41313025-41313108)
chr8 (99-184)||(26724679-26724764)
chr8 (104-182)||(13637675-13637752)
chr8 (104-182)||(13738088-13738165)
chr8 (99-184)||(16220736-16220822)
chr8 (99-184)||(30203233-30203318)
chr8 (99-180)||(37810178-37810259)
chr8 (99-174)||(9899999-9900074)
chr8 (99-157)||(40917890-40917948)
chr8 (99-184)||(3460772-3460857)
chr8 (99-184)||(39566030-39566115)
chr8 (103-159)||(28155277-28155332)
chr8 (99-159)||(40463924-40463983)
[»] chr1 (8 HSPs)
chr1 (99-189)||(34079915-34080005)
chr1 (104-182)||(3936551-3936628)
chr1 (103-200)||(25018157-25018255)
chr1 (99-188)||(1048968-1049057)
chr1 (99-184)||(14592055-14592140)
chr1 (135-184)||(33775247-33775296)
chr1 (99-181)||(1047883-1047965)
chr1 (99-200)||(46101851-46101952)
[»] scaffold0294 (1 HSPs)
scaffold0294 (99-184)||(2147-2232)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 6271795 - 6271688
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaata 198  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6271795 attgttttagttgtttggtttaaaagaaagtgaagtagaaaattgaaggaaagaaagatctatatttattaattgacataaatacctttgaatagaaata 6271696  T
Q  199 atgtatat 206  Q
    ||||||||    
T  6271695 atgtatat 6271688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 34516395 - 34516304
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaa 190  Q
    |||||||| |||||||||| |||||||||||| | | ||||||| ||||||||||||||  |||||||||| |||||||||||||| |||||    
T  34516395 attgttttggttgtttggtataaaagaaagtggaatggaaagttaaaggaaagaaagatccatatttattagttgacataaatacccttgaa 34516304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 13201482 - 13201433
Alignment:
Q  135 agaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13201482 agaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 13201433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 28482758 - 28482673
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||| ||| ||||||  || |||||||||| ||||||| || ||||||||||||| || ||||| |||||||||| ||||||    
T  28482758 attgttttggttatttggtacaagagaaagtgaaatagaaagatggaggaaagaaagatctaaatttaataattgacattaatacc 28482673  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 29795173 - 29795088
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||| ||| ||||||  || |||||||||| ||||||| || ||||||||||||| || ||||| |||||||||| ||||||    
T  29795173 attgttttggttatttggtacaagagaaagtgaaatagaaagatggaggaaagaaagatctaaatttaataattgacattaatacc 29795088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 6271677 - 6271637
Alignment:
Q  204 tattagtataaaattttctaagatgaatatacatataaacat 245  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  6271677 tattagtataaaattttc-aagatgaatatacatataaacat 6271637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 24167307 - 24167226
Alignment:
Q  103 ttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||| ||||||||||  || ||||| || | |||||||||| |||||||||||| ||| ||||| |||||||||| ||||||    
T  24167307 ttttggttgtttggtacaagagaaactggaatagaaagttggaggaaagaaagacataaatttagtaattgacattaatacc 24167226  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 33858947 - 33858846
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaata 198  Q
    |||| ||| |||||||||| ||| ||||||| ||| |||||||  || |||||||| |||||| |||| ||||||||||| ||| |  |||||| |||||    
T  33858947 attgatttggttgtttggtataagagaaagtaaagaagaaagtgaaaagaaagaaacatatatttttagtaattgacatatataaccctgaataaaaata 33858848  T
Q  199 at 200  Q
    ||    
T  33858847 at 33858846  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 31642568 - 31642463
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaata 198  Q
    |||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||    
T  31642568 attgttttggttgtttggtataaaagaaagtaaagtagaaagttgaaggaaagaaagatctatatttattgattgacataaatacccttgaataaaaata 31642469  T
Q  199 atgtat 204  Q
    ||||||    
T  31642468 atgtat 31642463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 29078415 - 29078506
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaa 190  Q
    |||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  29078415 attgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagatccatattttttaattgacataaatacctttgaa 29078506  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 3601817 - 3601902
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||| |||||||| |  ||||||||||| |||||||| |||||||||||||| | ||| ||||  |||||||||||||||||    
T  3601817 attgttttggttgtttgatacaaaagaaagtggagtagaaaattgaaggaaagaaaaacatacatttggtaattgacataaatacc 3601902  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 6191835 - 6191916
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaa 180  Q
    |||||||| |||||||||||||| |||||||| | || ||||||  ||||||||| ||| ||| |||| |||||||||||||    
T  6191835 attgttttggttgtttggtttaagagaaagtggattaaaaagtttgaggaaagaatgatctatttttagtaattgacataaa 6191916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 13481467 - 13481547
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataa 179  Q
    |||||||| ||||||||||  ||  ||||||| | |||||||||| ||||||||||||| |||||||  ||||||||||||    
T  13481467 attgttttggttgtttggtacaagggaaagtggaatagaaagttggaggaaagaaagatctatattttctaattgacataa 13481547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 925783 - 925682
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaata 198  Q
    |||| ||| |||||||||| ||| |||||||  || |||||||  ||||||||||| || ||| |||| ||||||||||| ||| |  |||||| |||||    
T  925783 attgatttggttgtttggtataagagaaagtagagaagaaagtgaaaggaaagaaacatgtatttttagtaattgacatatataaccctgaataaaaata 925684  T
Q  199 at 200  Q
    ||    
T  925683 at 925682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 37660728 - 37660668
Alignment:
Q  104 tttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatattt 165  Q
    |||||||||||| | |||| |||||||||  |||||||  ||||||||||||||||||||||    
T  37660728 tttagttgtttgttataaatgaaagtgaaa-agaaagtgaaaggaaagaaagatatatattt 37660668  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 36119605 - 36119498
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaata 198  Q
    |||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||    
T  36119605 attgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagatatatatttattaattgacataaatactcttgaatagaagta 36119506  T
Q  199 atgtatat 206  Q
    || |||||    
T  36119505 atatatat 36119498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 23544136 - 23544237
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaata 198  Q
    |||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||    
T  23544136 attgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagatatatatttattaattaacataaatacccttgaatagaagta 23544235  T
Q  199 at 200  Q
    ||    
T  23544236 at 23544237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 10310465 - 10310374
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaa 190  Q
    |||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||  |||||| |||||||||||||||||| |||||    
T  10310465 attgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagatccatattttttaattgacataaatacccttgaa 10310374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 29696498 - 29696413
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||| |||||||||| | |||||||||||| ||||||| | |||||||||||||| |||||||| ||||||||| |||||||    
T  29696498 attgttttggttgtttggtatgaaagaaagtgaaatagaaaggttaaggaaagaaagatctatatttaataattgacaaaaatacc 29696413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 54681847 - 54681937
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttga 189  Q
    ||||||||||||||||||| ||| |||||||| | |||||| ||||||||| |||| || ||||| || ||||||||||||||||| ||||    
T  54681847 attgttttagttgtttggtataatagaaagtggaatagaaaattgaaggaaggaaaaatctatatatagtaattgacataaatacccttga 54681937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 50303566 - 50303476
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttga 189  Q
    |||||||| |||||||||| |||| |||||| || ||||||| | || ||||||||||| |||||||| ||||||||| ||||||| ||||    
T  50303566 attgttttggttgtttggtataaaggaaagtaaaatagaaaggttaaagaaagaaagatctatatttaataattgacaaaaatacccttga 50303476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 31518411 - 31518487
Alignment:
Q  108 gttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||||| ||| | |||||| | ||||||||  |||||||||||||| ||||||| ||||||||||||||||||    
T  31518411 gttgtttggtataagataaagtggattagaaagtgaaaggaaagaaagatctatattttttaattgacataaatacc 31518487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 48035450 - 48035547
Alignment:
Q  103 ttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaataat 200  Q
    |||| ||||||| || ||| |||||||| | | |||||||| ||||||||||||| ||||  |  ||||||||||||||||| ||||||| |||||||    
T  48035450 ttttggttgtttcgtataagagaaagtggattggaaagttggaggaaagaaagatctataaattataattgacataaatacccttgaatataaataat 48035547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 53401666 - 53401617
Alignment:
Q  135 agaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||||||||||||||||||||||| |||||| || |||||||||||    
T  53401666 agaaagttgaaggaaagaaagatatataattattagtttacataaatacc 53401617  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 55961323 - 55961238
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||| ||| |||||||||| |||||||| | |||||| ||| ||||||||||||||||| |||  ||||||| ||| |||||    
T  55961323 attgttttggttatttggtttaatagaaagtggattagaaaattggaggaaagaaagatatattttttctaattgatatagatacc 55961238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 46307359 - 46307454
Alignment:
Q  105 ttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaataat 200  Q
    ||||||||||||| ||| |||||||  | |||||||||||||||||||||||  || ||||| ||||||| || |||| | || |||| |||||||    
T  46307359 ttagttgtttggtataagagaaagttgaatagaaagttgaaggaaagaaagacctaaatttagtaattgatattaatatccttaaataaaaataat 46307454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 7138787 - 7138868
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaa 180  Q
    ||||||||  ||||||||||||| |||||||| | |||| ||||  |||||| || ||||||| |||| |||||||||||||    
T  7138787 attgttttgattgtttggtttaagagaaagtggattagacagtttgaggaaaaaatgatatatttttagtaattgacataaa 7138868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 53849407 - 53849371
Alignment:
Q  148 aaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||||||| ||||||||||||||||||||||||    
T  53849407 aaagaaagatatgtatttattaattgacataaatacc 53849371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 523380 - 523424
Alignment:
Q  108 gttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaa 153  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||    
T  523380 gttgtttggtataaaagaaagtgaa-tagaaagtggaaggaaagaa 523424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 4729407 - 4729322
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||| ||||||||||  || ||||| |||| |||||||||| || |||||||||  || ||||  || ||||||||||||||    
T  4729407 attgttttggttgtttggtacaagagaaattgaaatagaaagttggagaaaagaaagacttacatttggtagttgacataaatacc 4729322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 39878647 - 39878732
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||| |||||||||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39878647 attgttttggttgtttggtataaaagaaaatggaatagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 39878732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 33055561 - 33055471
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttga 189  Q
    ||||||||||||||||||| ||| |||||||||||||||| ||| ||| |||||||||| |||||||| ||||||||  ||||||| ||||    
T  33055561 attgttttagttgtttggtataagagaaagtgaagtagaatgttaaagaaaagaaagatctatatttaataattgactaaaatacccttga 33055471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 22491787 - 22491686
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaata 198  Q
    |||||||| ||||||||||  || |||||||| ||||||||||| |||||||||||||| || || || |||||||||| |||||| || |||| |||||    
T  22491787 attgttttggttgtttggtacaagagaaagtggagtagaaagtttaaggaaagaaagatctaaatgtagtaattgacattaatacccttaaataaaaata 22491688  T
Q  199 at 200  Q
    ||    
T  22491687 at 22491686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 45225773 - 45225691
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaat 181  Q
    |||||||| |||||||||||||| |||||||| | |||||| |||||||||||||| || ||| |||  ||||||||||||||    
T  45225773 attgttttggttgtttggtttaatagaaagtggattagaaaattgaaggaaagaaaaatctattttttgtaattgacataaat 45225691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 45223659 - 45223725
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatattt 165  Q
    ||||||||||||||||||| ||| ||||||||||||| || |||| ||| |||||| || |||||||    
T  45223659 attgttttagttgtttggtataagagaaagtgaagtaaaatgttgtagggaagaaaaatctatattt 45223725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 3765767 - 3765686
Alignment:
Q  101 tgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaata 182  Q
    |||||| ||||||| || ||| ||||| |||  |||||||||||||||||||||||  || ||||| || ||||||||||||    
T  3765767 tgttttggttgtttagtataagagaaaatgagatagaaagttgaaggaaagaaagacctacatttaatagttgacataaata 3765686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 41085027 - 41085104
Alignment:
Q  103 ttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaa 180  Q
    |||| |||||||||| ||| |||||||| | |||||||||| ||||||||||||  || ||||| |||| ||||||||    
T  41085027 ttttggttgtttggtataagagaaagtggaatagaaagttggaggaaagaaagacttaaatttagtaatcgacataaa 41085104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 25750250 - 25750152
Alignment:
Q  103 ttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatat-atttattaattgacataaatacctttgaatagaaataat 200  Q
    |||| |||||||||| ||| |||||||  ||| || |||| || ||||||||||||||| | | || ||||||||||||||||  |||||| |||||||    
T  25750250 ttttggttgtttggtataagagaaagtagagtggatagttaaaagaaagaaagatatataaatgataaattgacataaatacccatgaatataaataat 25750152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 41816342 - 41816284
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagat 157  Q
    |||||||| |||||||||||||| |||||||| | | |||| ||| |||||||||||||    
T  41816342 attgttttggttgtttggtttaatagaaagtggattggaaaattggaggaaagaaagat 41816284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 7345142 - 7345093
Alignment:
Q  135 agaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    ||||||| |||||||||||||||||||| |||||| || |||| ||||||    
T  7345142 agaaagtggaaggaaagaaagatatataattattagtttacattaatacc 7345093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 44623879 - 44623959
Alignment:
Q  103 ttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    ||||||||||||||| |||  ||||||||   |||||||||||||||| |||||||| |  |||||| || |||||||||||    
T  44623879 ttttagttgtttggtataagtgaaagtgata-agaaagttgaaggaaaaaaagatatcttattattagtttacataaatacc 44623959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 30514674 - 30514634
Alignment:
Q  144 aaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    ||||||||||||||||||||||| ||| ||||| |||||||    
T  30514674 aaggaaagaaagatatatatttagtaaatgacaaaaatacc 30514634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 31206002 - 31206042
Alignment:
Q  144 aaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||||||||| |||||||| ||| |||||||||||||    
T  31206002 aaggaaagaaagatgtatatttaataaatgacataaatacc 31206042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 33698566 - 33698507
Alignment:
Q  103 ttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatat 163  Q
    ||||||||||||||| |||| ||||||| || ||||| |  ||||||||||||||||||||    
T  33698566 ttttagttgtttggtataaatgaaagtg-agaagaaattgaaaggaaagaaagatatatat 33698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 4921541 - 4921398
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaata 198  Q
    |||||||| |||||||||| | ||||||||| ||||| |||||| ||||||||||||||  ||||||||||| ||||||||||| | ||||||| |||||    
T  4921541 attgttttggttgtttggtattaaagaaagtaaagtaaaaagttaaaggaaagaaagattcatatttattaactgacataaatatccttgaataaaaata 4921442  T
Q  199 atgtatattagtataaaattttctaagatgaatatacatataaacat 245  Q
     |||||||||    || |||||| |||||||||||||||||||||||    
T  4921441 gtgtatatta--caaacattttc-aagatgaatatacatataaacat 4921398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 99 - 245
Target Start/End: Original strand, 41697349 - 41697492
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaata 198  Q
    |||||||| |||||||||| | ||||||||| ||||| |||||| ||||||||||||||  ||||||||||| ||||||||||| | ||||||| |||||    
T  41697349 attgttttggttgtttggtattaaagaaagtaaagtaaaaagttaaaggaaagaaagattcatatttattaactgacataaatatccttgaataaaaata 41697448  T
Q  199 atgtatattagtataaaattttctaagatgaatatacatataaacat 245  Q
     ||||||||||   || |||||| ||||| |||||||||||||||||    
T  41697449 gtgtatattag--aaacattttc-aagataaatatacatataaacat 41697492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 19555284 - 19555203
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaa 180  Q
    |||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  19555284 attgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaagacataaatttagtaattgacataaa 19555203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 43229216 - 43229295
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacata 178  Q
    ||||||||||||||||||| ||| |||||||| | ||||||||||||||||| |||||  || ||||| |||||||||||    
T  43229216 attgttttagttgtttggtataagagaaagtggaatagaaagttgaaggaaacaaagacctaaatttagtaattgacata 43229295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 39144469 - 39144550
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaa 180  Q
    |||||||| ||||||||||  ||||||||||| | |||||| || ||||||||||||||  |||||||||||||| ||||||    
T  39144469 attgttttggttgtttggtacaaaagaaagtggaatagaaaattaaaggaaagaaagatccatatttattaattggcataaa 39144550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 4048862 - 4048786
Alignment:
Q  105 ttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaata 182  Q
    ||||||||||||| |  ||||||||| |  |||||||||||| ||||| |||||||| |||||||| |||||||||||    
T  4048862 ttagttgtttggtatcgaagaaagtggaa-agaaagttgaagaaaagatagatatatttttattaaatgacataaata 4048786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 20654709 - 20654792
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaata 182  Q
    |||||||| |||||||||||||| ||||| || | |||||||||| ||||||||| |||  || |||| || || |||||||||    
T  20654709 attgttttggttgtttggtttaagagaaaatggattagaaagttggaggaaagaatgatcaatttttaatacttaacataaata 20654792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 40166696 - 40166739
Alignment:
Q  144 aaggaaagaaagatatatatttattaattgacataaataccttt 187  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||    
T  40166696 aaggaaagaaagatttatatttaataaatgacataaataccttt 40166739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 23153642 - 23153701
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatat 159  Q
    |||||||| |||||||||| |||||||||||||| ||||  |||  |||||||||||||||    
T  23153642 attgttttggttgtttggtataaaagaaagtgaa-tagattgttagaggaaagaaagatat 23153701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 30571527 - 30571487
Alignment:
Q  145 aggaaagaaagatatatatttattaattgacataaatacct 185  Q
    |||||||||| || |||||||| ||||||||||||||||||    
T  30571527 aggaaagaaaaatctatatttaataattgacataaatacct 30571487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 10723753 - 10723667
Alignment:
Q  103 ttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttga 189  Q
    ||||||||||||||| ||| |||||||| | |||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||    
T  10723753 ttttagttgtttggtataatagaaagtggaatagaaagttgaaggaaagaaagatctatatatagtaattgacataaatacccttga 10723667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 6955949 - 6955872
Alignment:
Q  104 tttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaata 182  Q
    |||||||||||||| |  ||||||||| |  |||||||||||||||||| |||||||| |||||||| |||||||||||    
T  6955949 tttagttgtttggtatcgaagaaagtggaa-agaaagttgaaggaaagatagatatatttttattaaatgacataaata 6955872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 34706429 - 34706514
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    ||||||||||||||||||||||| ||||| || | |||||  ||| ||||||||||||| ||| |||  ||||||||||| |||||    
T  34706429 attgttttagttgtttggtttaatagaaaatggattagaacattggaggaaagaaagatctattttttctaattgacatagatacc 34706514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 28850108 - 28850028
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataa 179  Q
    |||||||| |||||||||||||| |||||||| | | |||||||  ||||||||| ||| ||| |||| ||||||||||||    
T  28850108 attgttttggttgtttggtttaagagaaagtggattcgaaagtttgaggaaagaatgatctatttttagtaattgacataa 28850028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 9020695 - 9020637
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagat 157  Q
    |||||||| |||||||||||||| |||||||| | |||||| ||| |||||||||||||    
T  9020695 attgttttggttgtttggtttaatagaaagtggattagaaaattggaggaaagaaagat 9020637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 31543547 - 31543462
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||| | |||||||||| ||| ||||||||   ||||||||  |||||||||||||| | ||||| |||||||||| |||||||    
T  31543547 attgttatggttgtttggtataagagaaagtgggttagaaagtgaaaggaaagaaagatctgtattttttaattgacagaaatacc 31543462  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 7330965 - 7330886
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacata 178  Q
    ||||||||  ||||||||||||| |||||||| | |||||||||  | ||||||| ||| ||| |||| |||||||||||    
T  7330965 attgttttgattgtttggtttaagagaaagtggattagaaagtttgaagaaagaatgatctatttttagtaattgacata 7330886  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 45774593 - 45774672
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacata 178  Q
    |||| ||| |||||||||| ||| |||||||  || |||||||  ||||||||||| |||||| |||| |||||||||||    
T  45774593 attgatttggttgtttggtataagagaaagtagagaagaaagtgaaaggaaagaaacatatatttttagtaattgacata 45774672  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 41727464 - 41727541
Alignment:
Q  104 tttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaata 182  Q
    |||||||||||| | | |||||||||| |  |||||||||| ||||||| |||| ||| |||||||| |||||||||||    
T  41727464 tttagttgtttgatatcaaagaaagtggaa-agaaagttgagggaaagatagatttatttttattaaatgacataaata 41727541  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 12406102 - 12406182
Alignment:
Q  103 ttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    ||||||||||||||| |||  ||||||||   | |||||  ||||||||||||||||||| |||||| || |||||||||||    
T  12406102 ttttagttgtttggtataagtgaaagtgataaa-aaagtgaaaggaaagaaagatatataattattagtttacataaatacc 12406182  T

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Target: scaffold0392 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 921 - 831
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttga 189  Q
    ||||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||| |||||||| || |||||  ||||||| ||||    
T  921 attgttttagttgtttgatataagagaaagtgaagtagaatgttgaaggaaagaaagatctatatttaatagttgactaaaatacccttga 831  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 41313108 - 41313025
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaata 182  Q
    |||||| | |||||||||| ||| |||||||||| ||||||||  |||||||||||||| ||||||| ||||||||||||||||    
T  41313108 attgttatggttgtttggtataagagaaagtgaattagaaagtgaaaggaaagaaagatctatattttttaattgacataaata 41313025  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 26724764 - 26724679
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||| | ||||||||||  || |||||||  | ||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  26724764 attgttatggttgtttggtaaaagagaaagtagaatagaaagtaaaaggaaagaaagatatatctttattaattgacataaatacc 26724679  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 13637752 - 13637675
Alignment:
Q  104 tttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaata 182  Q
    |||||||||||||| | |||||||||| |  |||||||||||||||||| |||| ||| |||||||| |||||||||||    
T  13637752 tttagttgtttggtatcaaagaaagtggaa-agaaagttgaaggaaagatagatctatttttattaaatgacataaata 13637675  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 13738165 - 13738088
Alignment:
Q  104 tttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaata 182  Q
    |||||||||||||| | |||||||||| |  |||||||||||||||||| |||| ||| |||||||| |||||||||||    
T  13738165 tttagttgtttggtatcaaagaaagtggaa-agaaagttgaaggaaagatagatctatttttattaaatgacataaata 13738088  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 16220822 - 16220736
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatata-tatttattaattgacataaatacc 184  Q
    |||||||| | |||||||| ||| |||||||| | ||||||||| |||||||||||||| || | |||| |||||||||||||||||    
T  16220822 attgttttggatgtttggtataagagaaagtggaatagaaagttaaaggaaagaaagatctattttttaataattgacataaatacc 16220736  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 30203318 - 30203233
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||| | ||||||||||  || |||||||  | ||||||||   ||||||||||||||||| ||||||||||||||||||||||    
T  30203318 attgttatggttgtttggtaaaagagaaagtagaatagaaagtaagaggaaagaaagatatatctttattaattgacataaatacc 30203233  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 37810178 - 37810259
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaa 180  Q
    |||||||| |||||||||||||| |||||||  | |||||||||  ||||||||| ||| ||| |||| |||||||||||||    
T  37810178 attgttttggttgtttggtttaagagaaagtcgattagaaagtttgaggaaagaatgatttatttttagtaattgacataaa 37810259  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 9899999 - 9900074
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattga 174  Q
    ||||||||| ||||||| | ||||||||||||||||| || ||||||||||  ||| || |||||||| |||||||    
T  9899999 attgttttaattgtttgatataaaagaaagtgaagtataacgttgaaggaacaaaaaatctatatttaataattga 9900074  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 40917890 - 40917948
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagat 157  Q
    |||||||| |||||||||||||| |||||||| | | |||| ||| |||||||||||||    
T  40917890 attgttttggttgtttggtttaatagaaagtggattggaaaattggaggaaagaaagat 40917948  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 3460772 - 3460857
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||| | |||||||||| ||| |||||||| | ||||||||   ||||||||||||| |||||||   || |||||||||||||    
T  3460772 attgttatggttgtttggtataagagaaagtggattagaaagtgagaggaaagaaagatttatattttgcaactgacataaatacc 3460857  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 39566115 - 39566030
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||| ||||||||||  |  |||||||| | |||||||||| |||||||||||||  | ||||  |||||||||||| ||||    
T  39566115 attgttttggttgtttggtacacgagaaagtggaatagaaagttggaggaaagaaagatcaacattttgtaattgacataattacc 39566030  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 28155332 - 28155277
Alignment:
Q  103 ttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatat 159  Q
    ||||||||||||||| ||| |||||||||| |||||||| ||| ||||||| |||||    
T  28155332 ttttagttgtttggtataagagaaagtgaa-tagaaagtggaacgaaagaatgatat 28155277  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 40463924 - 40463983
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatat 159  Q
    |||||||| |||||||||| |||||||||||||| ||||  |||  |||||||||||||||    
T  40463924 attgttttggttgtttggtataaaagaaagtgaa-tagattgttagaggaaagaaagatat 40463983  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 34079915 - 34080005
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttga 189  Q
    ||||| || |||||||||| ||||||||| || | ||| ||||||||||||||||| ||  ||||||||||||||||||||||||| ||||    
T  34079915 attgtcttggttgtttggtataaaagaaaatggaataggaagttgaaggaaagaaatatccatatttattaattgacataaatacccttga 34080005  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 3936551 - 3936628
Alignment:
Q  104 tttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaata 182  Q
    |||||||||||||| |  ||||||||| |  |||||||||||||||||| | |||||| |||||||| |||||||||||    
T  3936551 tttagttgtttggtatcgaagaaagtggaa-agaaagttgaaggaaagataaatatatttttattaaatgacataaata 3936628  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 25018255 - 25018157
Alignment:
Q  103 ttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttatt-aattgacataaatacctttgaatagaaataat 200  Q
    |||| |||||||||| ||| |||||||  ||| || ||||||| ||||||||||||||||  | || ||||||||||||||||  |||||| |||||||    
T  25018255 ttttggttgtttggtataagagaaagtagagtggatagttgaaagaaagaaagatatataaatgttaaattgacataaatacccatgaatataaataat 25018157  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 1049057 - 1048968
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttg 188  Q
    |||||| | ||||||||||  || |||||||  | ||||||||   |||||||| |||| ||| ||||||||||||||||||||||||||    
T  1049057 attgttatggttgtttggtagaagagaaagtagaatagaaagtaagaggaaagatagatctatgtttattaattgacataaatacctttg 1048968  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 14592140 - 14592055
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||| ||||||||||  || |||||||| | |||||||||| ||||||||||||  || ||||| ||||||| || ||||||    
T  14592140 attgttttggttgtttggtacaagagaaagtggaatagaaagttggaggaaagaaagacctaaatttagtaattgatattaatacc 14592055  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 33775296 - 33775247
Alignment:
Q  135 agaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    ||||||| |||||||||||||||||||| |||||| || |||||||||||    
T  33775296 agaaagtggaaggaaagaaagatatataattattagtttacataaatacc 33775247  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 1047883 - 1047965
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaat 181  Q
    |||||||||||||||||||  || |||||||| | |||||||||| | ||||||||||  || | ||| ||||| ||||||||    
T  1047883 attgttttagttgtttggtacaagagaaagtggaatagaaagttggaagaaagaaagagttaaagttagtaattaacataaat 1047965  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 46101952 - 46101851
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacctttgaatagaaata 198  Q
    |||| ||| |||||||||| ||| |||||||  || ||||| |  ||||||||||| |||||| |||| ||||||||||| ||| |  |||||| |||||    
T  46101952 attgatttggttgtttggtataagagaaagtagagaagaaaatgaaaggaaagaaacatatatttttagtaattgacatatataaccctgaataaaaata 46101853  T
Q  199 at 200  Q
    ||    
T  46101852 at 46101851  T

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Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 2147 - 2232
Alignment:
Q  99 attgttttagttgtttggtttaaaagaaagtgaagtagaaagttgaaggaaagaaagatatatatttattaattgacataaatacc 184  Q
    |||||||| ||||||||||  ||  ||||||| | |||||||||| ||||||||||||| || ||||  |||||||||||| ||||    
T  2147 attgttttggttgtttggtacaagggaaagtggaatagaaagttggaggaaagaaagatctacattttgtaattgacataattacc 2232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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