View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20965_high_5 (Length: 315)
Name: NF20965_high_5
Description: NF20965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20965_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 32838566 - 32838710
Alignment:
| Q |
153 |
atgatttgttgacttacaatgatatatatcaaaattaaatttttatagaatattatgacaaacagctagtcattttgccaaagattatttaggatgttca |
252 |
Q |
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| T |
32838566 |
atgatttgttgacttacaatgatatatatcaaaattaaatttttatagaagattatgacaaacagctagtcattttgccaaagattatttaggatcttca |
32838665 |
T |
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| Q |
253 |
tatttttgttcaggactaatttgtctcaaattggtgattatgatg |
297 |
Q |
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| T |
32838666 |
tatttttgttcaggactaatttggctcaaattggtgattatgatg |
32838710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 32835789 - 32835875
Alignment:
| Q |
32 |
gtctttaaatggtttctcgaggagttaacttattttctttgacgaacctctcctttaattttgaaactagttttaacatatttaatc |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32835789 |
gtcttttaatggtttctcgaggagttaacttattttctttaactaacctctcctttaattttgaaactagttttaaaatatttaatc |
32835875 |
T |
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