View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20965_low_11 (Length: 290)
Name: NF20965_low_11
Description: NF20965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20965_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 42271798 - 42272103
Alignment:
| Q |
7 |
aaatgaagcaaaaaggccactcaagtgtctcatctgcatttaatggcattgtgcaataactcattcacgccagacaaaacgacaactcaaaaggcgcaaa |
106 |
Q |
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| T |
42271798 |
aaatgaagcaaaaaggccactcaagtgtctcatctgcatttaatggcattgtgcaataactcattcacgccagacaaaacgacaactcaaaaggcgcaaa |
42271897 |
T |
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| Q |
107 |
ttgataacaatgccattaaatgcagatgaaagtgagactttgcaataacaatgccactcaagtgtctcactccccaaagatcttgcaacagagtcaaatt |
206 |
Q |
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| T |
42271898 |
ttgataacaatgccattaaatgcagatgaaagtgagactttgcaataacaatgccactcaagtgtctcactccccaaagatcttgcaacagagtcaaatt |
42271997 |
T |
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| Q |
207 |
aacat----------------------gtgaaccccatttatgatgcacctgtcaccctttatccgataagaatcttagccgaccaatggtttctcatac |
284 |
Q |
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| T |
42271998 |
aacatgtgaacagagtcaaattaacacgtgaaccccatttatgatgcacctgtcaccttttatccgataagaatcttagccgaacaatggtttctcatac |
42272097 |
T |
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| Q |
285 |
atgtcg |
290 |
Q |
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|||||| |
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| T |
42272098 |
atgtcg |
42272103 |
T |
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