View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20965_low_13 (Length: 280)

Name: NF20965_low_13
Description: NF20965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20965_low_13
NF20965_low_13
[»] chr4 (3 HSPs)
chr4 (11-280)||(23438416-23438679)
chr4 (34-280)||(23430387-23430621)
chr4 (75-278)||(23445216-23445412)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 23438416 - 23438679
Alignment:
Q  11 agcagagaatcatggttggcgtccattcatttttcttctatatataaagcaagaattagacattcattactcacatccatttttcttcaataataaagct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23438416 agcagagaatcatggttggcgtccattcatttttcttctatatataaagcaagaattagacattcattactcacatccatttttcttcaataataaagct 23438515  T
Q  111 tatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttctaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23438516 tatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttctaaa 23438615  T
Q  211 gaggttgagactcttcccacgacttactcttctacttctacccatcttcacctgacattgccttccactc 280  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  23438616 gaggttgagactcttcccacgacttact------cttctacccatcttcacctgacattgccttccactc 23438679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 280
Target Start/End: Original strand, 23430387 - 23430621
Alignment:
Q  34 cattcatttttcttctatatataaagcaagaattagacattcattactcacatccatttttcttcaataataaagcttatttttactttctcttgcataa 133  Q
    |||||||||||| |||||||||||| | ||||| | ||||| ||||     ||||||||| |||| | ||||||||||||| |||||||||||||||||     
T  23430387 cattcatttttcatctatatataaaacgagaatcatacattaattaa----atccatttt-cttctacaataaagcttattattactttctcttgcatac 23430481  T
Q  134 gaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttctaaagaggttgagactcttcccacgac 233  Q
     ||||||||| ||||||||| |||||||  | ||||||||||||||||| ||  |||| || | || ||||||| |||||||| ||| ||||||||| ||    
T  23430482 -aaaaatgtccaaagtcatgaccttagcgctgctcatgctcctagttgatactcttcctaccatggcgctttctgaagaggttaagaatcttcccaccac 23430580  T
Q  234 ttactcttctacttctacccatcttcacctgacattgccttccactc 280  Q
    |||||      || | |||||| ||||||||||||||||||||||||    
T  23430581 ttact------ctccaacccatgttcacctgacattgccttccactc 23430621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 278
Target Start/End: Original strand, 23445216 - 23445412
Alignment:
Q  75 cattactcacatccatttttcttcaataataaagcttatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctc 174  Q
    ||||| || |||| |||||||||| | |||||| ||||||||||||||||||||||||  |||| |||| |||| |||| ||||||  || ||| | |||    
T  23445216 cattagtctcatcaatttttcttctacaataaaacttatttttactttctcttgcatatcaaaa-tgtccaaagccatgaccttagtgttgctcctcctc 23445314  T
Q  175 ctagttgagacaattcccactacggtgctttctaaagaggttgagactcttcccacgacttactcttctacttctacccatcttcacctgacattgcctt 274  Q
    ||||||  | |  ||  |||||||||||||||| |||||||||||||||||||| | |||||||      || |||||||| ||||| ||||||||||||    
T  23445315 ctagttttgtctcttttcactacggtgctttctgaagaggttgagactcttcccgccacttact------ctcctacccatattcacatgacattgcctt 23445408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University