View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20965_low_17 (Length: 247)

Name: NF20965_low_17
Description: NF20965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20965_low_17
NF20965_low_17
[»] chr4 (1 HSPs)
chr4 (11-178)||(13460657-13460827)
[»] chr5 (1 HSPs)
chr5 (199-247)||(19197196-19197244)
[»] chr8 (1 HSPs)
chr8 (67-115)||(14913611-14913658)
[»] chr3 (1 HSPs)
chr3 (67-115)||(7346878-7346925)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 13460827 - 13460657
Alignment:
Q  11 agaagagagaaatagttat-ttttaattaattnnnnnnntaagggtattttgataataatgttcaattaatattttggaaagaaccattaaaaagaaatt 109  Q
    ||||||||||||||||||| ||||||||||||       ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  13460827 agaagagagaaatagttatcttttaattaattaaaaaa-taagggtattttggtaataatattcaattaatattttggaaagaaccattaaacagaaatt 13460729  T
Q  110 ctgaagnnnnnnnnnnnnaaaataataataatgacat---ggcagtgccacgtaatgacgtgtcagtgccac 178  Q
     |||||            ||||||||||||||||| |   ||||||||||||||||||||||||||||||||    
T  13460728 ttgaagtttttttaaaaaaaaataataataatgacgtggcggcagtgccacgtaatgacgtgtcagtgccac 13460657  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 19197196 - 19197244
Alignment:
Q  199 atagcatcatttattgttttagtattaatgatgtctaagagctattgat 247  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19197196 atagcatcatttattgttttagtattaatgatgactaagagctattgat 19197244  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 14913658 - 14913611
Alignment:
Q  67 aatgttcaattaatattttggaaagaaccattaaaaagaaattctgaag 115  Q
    |||||||||||||| ||||||||| || ||||||| |||||||||||||    
T  14913658 aatgttcaattaattttttggaaa-aaacattaaatagaaattctgaag 14913611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 7346925 - 7346878
Alignment:
Q  67 aatgttcaattaatattttggaaagaaccattaaaaagaaattctgaag 115  Q
    |||||||||||||| ||||||||| || ||||||| |||||||||||||    
T  7346925 aatgttcaattaattttttggaaa-aaacattaaatagaaattctgaag 7346878  T

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