View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20965_low_2 (Length: 644)
Name: NF20965_low_2
Description: NF20965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20965_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 17 - 566
Target Start/End: Complemental strand, 9297211 - 9296692
Alignment:
| Q |
17 |
gaatctaccacaggcaacttcaaaacaaatgcaagatcttttttaggcaaataacggtgttttcttctgtaatttatgttgcttataagtactattacgt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9297211 |
gaatctaccacaggcaacttcaaaacaaatgcaagatcttttttaagcaaataactgtgttttcttctgtaatttatgttgcttataagtactattacgt |
9297112 |
T |
|
| Q |
117 |
gagtaatgatgctgagcagaggctagtcttgcattttatgttgtaatgttctacatgtttataccaaacaacacaatcaacttatatcgaattagaacct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9297111 |
gagtaatgatgctgagcagaggctagtcttgcattttatgttgtaatgttctacatgtttataccaaacaacacaatcaacttatatcgaat-------- |
9297020 |
T |
|
| Q |
217 |
caaccttaaaactatgtttcataataattccatctaacttatcaatccttctccaaaggtgtaatatgcttaccattcggcatgtttatggcattgtgtt |
316 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9297019 |
-------------atgtttcttaataattccatctaacttatcaatccttttccaaaggtgtaatatgcttaccattcggcatgtttatggcattgtgtt |
9296933 |
T |
|
| Q |
317 |
ctaacatatggacttttggatcatgagattacctactgatgtcaaagttaacgatggctagcacaatgaatcttttccacagccccacaatgaatctatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9296932 |
ctaacatatggacttttggatcatgagattacctactgatgtcaaagttaacgatggctagcacaatgaatcttttccacagccccacaatgaatctatt |
9296833 |
T |
|
| Q |
417 |
tctttatttcatcactcaatcaaatttataatttgtatttctgttaattctgtaacttattttatactcttattcttcatgccggattatctatgatttg |
516 |
Q |
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| T |
9296832 |
tctttatttcatcactcaatcaaatttataatttgtattt---------ctgtaactttttttatactcttattcttcatgccggattatctatgatttg |
9296742 |
T |
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| Q |
517 |
ggaatttgatgcaggttctgtttatttaaatttatgttcatatccatttt |
566 |
Q |
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| T |
9296741 |
ggaatttgatgcaggttctgtttatttaaatttatgttcatatccatttt |
9296692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 419 - 635
Target Start/End: Complemental strand, 9286088 - 9285882
Alignment:
| Q |
419 |
tttatttcatcactcaatcaaatttataatt-tgtatttctgttaattctgtaacttattttatactcttattcttcatgccggattatctatgatttgg |
517 |
Q |
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| T |
9286088 |
tttatttcatcactcaatcaaatttataattctgt-tttctgttacttctgtaactt----tatattcttattcttcaagctggaatatctatgagttgg |
9285994 |
T |
|
| Q |
518 |
gaatttgatgcaggttctgtttatttaaatttatgttcatatccattttcattcaaatctacagtctacagatgtgatttttctgtgctcagattcttct |
617 |
Q |
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|||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||| | || | ||||||||||||||||||||||||||||| |
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| T |
9285993 |
gaattttatgcaggttctgttcatttaa----atgttcatatccatttttattcaaatct--cttatatacatgtgatttttctgtgctcagattcttct |
9285900 |
T |
|
| Q |
618 |
ctttgctcacattctctg |
635 |
Q |
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| T |
9285899 |
ctttgctcacattctctg |
9285882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 562 - 635
Target Start/End: Complemental strand, 9295861 - 9295788
Alignment:
| Q |
562 |
attttcattcaaatctacagtctacagatgtgatttttctgtgctcagattcttctctttgctcacattctctg |
635 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9295861 |
attttcattcaaatctacagtctacagatgtgatttttctgtgctcagattcttctctttgctcacattctctg |
9295788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 476 - 633
Target Start/End: Complemental strand, 47262772 - 47262618
Alignment:
| Q |
476 |
ttttatactcttattcttcatgccggattatctatgatttgggaatttgatgcaggttctgtttatttaaatttatgttcatatccattttcattcaaat |
575 |
Q |
| |
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|||||||||||||| ||||| | ||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
47262772 |
ttttatactcttat-cttcaagttggattatctatgatttgtgaattt-atgcaggttctgttcatttagatttatgtttatatccattttcattcaaat |
47262675 |
T |
|
| Q |
576 |
ctacagtctacagatgtgatttttctgtgctcagattcttctctttgctcacattctc |
633 |
Q |
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|||| |||| |||||||| ||||||||||||| || |||||||||| | |||||| |
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| T |
47262674 |
ctac-ctctatggatgtgatctttctgtgctcaggttactctctttgcttagattctc |
47262618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 270 - 396
Target Start/End: Original strand, 35957016 - 35957144
Alignment:
| Q |
270 |
caaaggtgtaatatgcttaccattcggcatgtttatggcattgtgttctaacatatggacttttggatcatgag--attacctactgatgtcaaagttaa |
367 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| ||||||||||||||| ||| ||||||| || | ||| ||||||||||||| || ||||||| |
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| T |
35957016 |
caaaggtgtaatatgctgaccattgaacatgtttatgacattgtgttctaacagatgaacttttgtatgacgagatattacctactgatttccaagttaa |
35957115 |
T |
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| Q |
368 |
cgatggctagcacaatgaatcttttccac |
396 |
Q |
| |
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| T |
35957116 |
caatggcatacaaaatgaatctttaccac |
35957144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 396
Target Start/End: Original strand, 35974909 - 35975037
Alignment:
| Q |
270 |
caaaggtgtaatatgcttaccattcggcatgtttatggcattgtgttctaacatatggacttttggatcatgagat--tacctactgatgtcaaagttaa |
367 |
Q |
| |
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|||||||||||||||| |||||| ||||||||| || |||||| ||||| ||| ||||||| | || ||||| || |||||||| |||||||||| |
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| T |
35974909 |
caaaggtgtaatatgccgaccattgaacatgtttataacaatgtgttttaacagatgaacttttgaaccaggagatattatctactgatttcaaagttaa |
35975008 |
T |
|
| Q |
368 |
cgatggctagcacaatgaatcttttccac |
396 |
Q |
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||||| ||||||||||||||||||| |
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| T |
35975009 |
aaatggcatacacaatgaatcttttccac |
35975037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 395
Target Start/End: Original strand, 35980120 - 35980252
Alignment:
| Q |
270 |
caaaggtgtaatatgcttaccattcg-gcatgtttatggcattgtgtt----ctaacatatggacttttggatcatgagat--tacctactgatgtcaaa |
362 |
Q |
| |
|
|||||||||||||| || |||||| ||||||| ||| ||||||||| |||||| ||| |||||||||| | ||||| ||||||||||| ||||| |
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| T |
35980120 |
caaaggtgtaatatactaaccatttaagcatgttaatgacattgtgtttattctaacagatgaacttttggataaggagatattacctactgatatcaaa |
35980219 |
T |
|
| Q |
363 |
gttaacgatggctagcacaatgaatcttttcca |
395 |
Q |
| |
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|||||| ||||| ||||| ||||| ||||||| |
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| T |
35980220 |
gttaacaatggcatgcacagtgaattttttcca |
35980252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 612
Target Start/End: Complemental strand, 37466098 - 37466034
Alignment:
| Q |
546 |
atttatgttcatatccattttcattcaaatctacagtctacagatgtgatttttctgtgctcagatt |
612 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||| |
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| T |
37466098 |
atttatgttcatatccattt-cattcaaatctact-tctatgaatgtgatttttctgtggtcagatt |
37466034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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