View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20965_low_3 (Length: 630)
Name: NF20965_low_3
Description: NF20965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20965_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 301 - 616
Target Start/End: Original strand, 9645547 - 9645858
Alignment:
| Q |
301 |
ggagaggtgagaagacatagctaaaagttgtcttacttcaaacctttatggaccctagcagcagggcttagcacattttcaagtacattacttcagtctt |
400 |
Q |
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| T |
9645547 |
ggagaggtgagaagacatagctaaaagttgtcttacttcaaacctttatggaccctagcagcagggcttagcacattttcaagtacattacttcagtctt |
9645646 |
T |
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| Q |
401 |
ttgtatccaaatagatgattttgttagtggtagtttagctcatcatctttttatcgcatgcagaacatagaagcctaaaattcccgcgcttgcacctaca |
500 |
Q |
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| T |
9645647 |
ttgtttccaaatagatgattttgttagtggtagtttagctcatcatctttttatcgcatgcagaacatagaagcctaaaattcccgcgcttgcacctaca |
9645746 |
T |
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| Q |
501 |
aatacaaactcctacttgcttcaagtttctttttacacatatgaaatttcatgtattaaacttgaaaatacaaatacatatatgtattgcagggttgtcc |
600 |
Q |
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| T |
9645747 |
aatacaaactcctacttgcttcaagtttctttttacac--atgaaatttcatgtattaaacttgaaaatacaaatac--atatgtattgcagggttgtcc |
9645842 |
T |
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| Q |
601 |
aaattgctatatagtg |
616 |
Q |
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| T |
9645843 |
aaattgctatatagtg |
9645858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 9645301 - 9645547
Alignment:
| Q |
10 |
agaagcaaagggatagtcatatgcactcatttagatagttagcatttcattttcgtttcattgtaatttcaatttcataagttactactttctgttggac |
109 |
Q |
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| T |
9645301 |
agaaacaaaaggatagtcatatgcactcatttagatagttagcatttcattttcgtttcattgtaatttcaatttcataagttactactttctgttggac |
9645400 |
T |
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| Q |
110 |
aatttttgttgccatgtagtgttacctccatatatatagcttcactttataaactcttaattcgttcagaacaccaagtagataaattgaataccactca |
209 |
Q |
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| T |
9645401 |
aatttttgttgtcatgtagtgttaccttcatatatatagcttcactctataaactcttaattcgttcagaacaccaagtagataaattgaataccactca |
9645500 |
T |
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| Q |
210 |
gagaaattttcatataacacatttgtatacaatttgtcaattgatgg |
256 |
Q |
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| T |
9645501 |
aagaaattttcatataacacatttgtatacaatttgtcaattgatgg |
9645547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 291 - 518
Target Start/End: Original strand, 30364317 - 30364542
Alignment:
| Q |
291 |
catatttataggagaggtgagaagacatagctaaaagttgtcttacttcaaacctttatggacccta-gcagcagggcttagcacattttcaagtacatt |
389 |
Q |
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||||||| ||||||||||||||| || | |||||| |||||||| ||||| | |||||||||||| |||||| ||||| |||||||||||| | ||| |
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| T |
30364317 |
catatttgtaggagaggtgagaaaacttgcctaaaatttgtcttatttcaacc--ttatggaccctatgcagcaaggcttcacacattttcaagcatatt |
30364414 |
T |
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| Q |
390 |
acttcagtcttttgtatccaaatagatgattttgttagtggtagtttagctcatcatctttttatcgcatgcagaacatagaagcct-aaaattcccgcg |
488 |
Q |
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| T |
30364415 |
acttcagtcttttgt-tcctactagatgattt-gtcggcgatagtttagctcatcatctttttatcgaatgcagaacatagaagcctgagagttccatcc |
30364512 |
T |
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| Q |
489 |
cttgcacctacaaatacaaactcctacttg |
518 |
Q |
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| T |
30364513 |
cttgcacctacaaatacaaactcttacttg |
30364542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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