View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20965_low_6 (Length: 429)
Name: NF20965_low_6
Description: NF20965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20965_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 6 - 414
Target Start/End: Complemental strand, 2275538 - 2275130
Alignment:
| Q |
6 |
agaagcaaaggagttgaatttcaatcttgcacccaaattcaaagattgtgggcccttttgagttggtaataaataaattcacttgttattactgcaggtt |
105 |
Q |
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| T |
2275538 |
agaagcaaaggagttgaatttcaatcttgcacccaaattcaaagattgtggacccttttgagttggtaataaataaattcacttgttattactgcaggtt |
2275439 |
T |
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| Q |
106 |
tcactctttgcaccatactcagtttagaacaaactactcactcttcatgccactttatgactacatttatggaacaatggacaaggcttcagatgagttg |
205 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2275438 |
tcactcattgcaccatactcagtttagaacaaactactcactcttcatgccactttatgactacatttatggaacaatggacaaggcttcagatgagttg |
2275339 |
T |
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| Q |
206 |
catgagtcaacattaaaaagaaaggaagagacaccaaatgttgtccacttaacacatttaacaaccccagaatccatttatcatctaagatttggatttg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2275338 |
catgagtcaacattaaaaagaaaggaagagacaccaaatgttgtccacttaacacatttaacaaccccagaatccatttatcatctaagatttggatttg |
2275239 |
T |
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| Q |
306 |
ctgccttggcttctaagccatacacatctaagtggtacctttggttgatgtggccttttacagcttggtccatgttcctcacatgggtctacggccgcac |
405 |
Q |
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| T |
2275238 |
ctgccttggcttctaagccatacacatctaagtggtacctttggttgatgtggccttttacagcttggtccatgttcctcacatgggtctacggccgcac |
2275139 |
T |
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| Q |
406 |
attcattgt |
414 |
Q |
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| T |
2275138 |
attcattgt |
2275130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 2255374 - 2255276
Alignment:
| Q |
100 |
caggtttcactctttgcaccatactcagtttagaacaaactactcactcttcatgccactttatgactacatttatggaacaatggacaaggcttcaga |
198 |
Q |
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| T |
2255374 |
caggttccactcattgcatcatacacaatttcggactaattattcactattcatgccaatttatgattacatctatggaactgttgacaaggcttcaga |
2255276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 35355181 - 35355221
Alignment:
| Q |
137 |
aactactcactcttcatgccactttatgactacatttatgg |
177 |
Q |
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| T |
35355181 |
aactactcacttttcatgccaatgtatgactacatttatgg |
35355221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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