View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20965_low_7 (Length: 327)
Name: NF20965_low_7
Description: NF20965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20965_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 44892629 - 44892832
Alignment:
| Q |
7 |
tggatatcttgactggaacacccgtcaagtctcactttgctagaccaaaatggcgcagcgtctacaagcgcattgcacttaatcatccacaaaaacgcat |
106 |
Q |
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| T |
44892629 |
tggatatcttaaatggaacacccatcgcgtcttactttgcacgacccaattggcgcagtgtctacaataggattgcaaataatcatccacaaaaacgcat |
44892728 |
T |
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| Q |
107 |
tggtgagttcctattcttcgtgctcatttgacataacaaagtcaacattttagagtttccattatcactgtaccattgtgatttcgtcaacttattgtgc |
206 |
Q |
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| T |
44892729 |
tggtgagttcctattcttcgtgctcatttgacataacaaagtcaacattttagagtttccattatcactgtaccattgtgatttcgtcaacttattgtgc |
44892828 |
T |
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| Q |
207 |
tacg |
210 |
Q |
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|||| |
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| T |
44892829 |
tacg |
44892832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 44901277 - 44901395
Alignment:
| Q |
2 |
tggtgtggatatcttgactggaacacccgtcaagtctcactttgctagaccaaaatggcgcagcgtctacaagcgcattgcacttaatcatccacaaaaa |
101 |
Q |
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| T |
44901277 |
tggtgtggatatcttgactggaacacccgtcaagtctcactttgctagaccaaaatggtgcagcgtctacaagcgcattgcacttaatcatccacaaaaa |
44901376 |
T |
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| Q |
102 |
cgcattggtgagttcctat |
120 |
Q |
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| T |
44901377 |
cgcattggtgagttcctat |
44901395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 44892855 - 44892927
Alignment:
| Q |
242 |
gagtattcattgaatgcactgaaatcgttattgaagatctgaacctatttcaatatgcaggagtgttttactg |
314 |
Q |
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| T |
44892855 |
gagtattcattgaatgcactgaaatcgttattgaagatctgaacctatttcaatatgcaggagtgttttactg |
44892927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 44918027 - 44918150
Alignment:
| Q |
2 |
tggtgtggatatcttgactggaacacccgtcaagtctcactttgctagaccaaaatggcgcagcgtctacaagcgcattgcacttaatcatccacaaaaa |
101 |
Q |
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||||||||||||| | ||||||||| |||||||||||||||||||| ||| || ||||| || |||||||||||||||||||||||||||||||||| | |
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| T |
44918027 |
tggtgtggatatcgtctctggaacacgcgtcaagtctcactttgctaaacctaattggcgtagtgtctacaagcgcattgcacttaatcatccacaaaca |
44918126 |
T |
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| Q |
102 |
cgcattggtgagttcctattcttc |
125 |
Q |
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||| ||||||||||| ||||||| |
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| T |
44918127 |
cgcgttggtgagttctcattcttc |
44918150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 39985716 - 39985780
Alignment:
| Q |
30 |
gtcaagtctcactttgctagaccaaaatggcgcagcgtctacaagcgcattgcacttaatcatcc |
94 |
Q |
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|||| |||||| ||||||| ||| || ||||||| |||||||| |||||||||||||||||||| |
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| T |
39985716 |
gtcatgtctcattttgctaaacccaattggcgcactgtctacaaacgcattgcacttaatcatcc |
39985780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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