View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20966_high_11 (Length: 351)
Name: NF20966_high_11
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 3656041 - 3656362
Alignment:
| Q |
20 |
gaatccgtgtgagttgtttagtacnnnnnnngcgactggtcgaatgaagcggtcatagaaaggaacggttaggagaatagttccgattaagaagacggtc |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3656041 |
gaatccgtgtgagttgtttagtactttttttgcgacgggtcgaatgaagcggtcgtagaaaggaacggttaggagaatagttccgattaagaagacggtc |
3656140 |
T |
|
| Q |
120 |
attgatgctgctgggatttgaaatgttccaatttgacaatccatggttgttgcttgtgatactgagaatgttgtcatttgagcatggattgtccaaaaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3656141 |
attgatgctgctgggatttgaaatgttccaatttgacaatccatggttgttgcttgtgatactgagaatgttgtcatttgagcatggattgtccaaaaca |
3656240 |
T |
|
| Q |
220 |
ttatggttgtggcccatatgggtaacatccttattaccattttaacttcttccacatctgttaaggtagaaatataccatttctccttgatggtcattgt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3656241 |
ttatggttgtggcccatatgggtaacatccttattaccattttaacttcttccacatctgttaaggtagaaatataccatttctccttgatggttattgt |
3656340 |
T |
|
| Q |
320 |
accgccactttctatgcctttg |
341 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3656341 |
accgccactttctatgcctttg |
3656362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 289
Target Start/End: Original strand, 3645439 - 3645639
Alignment:
| Q |
92 |
gagaatagttccgattaagaagacggtcattgatgctgctgggatttgaaatg---ttccaatttgacaatccatggttgttgcttgtgatactgagaat |
188 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| || | |||||| || ||||| |||||||| |||| | |
|
|
| T |
3645439 |
gagaatagttccaattaaaaaggatgtcattgatgctgctgggatttgaaatgattttccaatgtggcgatccatagtggttgcctgtgataccgagagt |
3645538 |
T |
|
| Q |
189 |
gttgtcatttgagcatggattgtccaaaacattatggttgtggcccatatgggtaacatccttattaccattttaacttcttccacatctgttaaggtag |
288 |
Q |
| |
|
|| |||||||| | || | |||||||||| ||||||| |||||||| || | ||| |||| |||| ||| |||||||| | ||| |||||||||| |
|
|
| T |
3645539 |
gtcatcatttgaacttgaacagtccaaaacacgatggttgatgcccatatagggagcattcttagcaccaatttcacttcttctatatcggttaaggtag |
3645638 |
T |
|
| Q |
289 |
a |
289 |
Q |
| |
|
| |
|
|
| T |
3645639 |
a |
3645639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 41875500 - 41875363
Alignment:
| Q |
165 |
gttgttgcttgtgatactgagaatgttgtcatttgagcatggattgtccaaaacattatggttgtggcccatatgggtaacatccttattaccattttaa |
264 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||| |||||||||||||| |||||||| |||| |||| ||| | |
|
|
| T |
41875500 |
gttgttgcttgtgatactgagaatgtggtcatttgtgcatatactgtccaaaacattatcgttgtggcccatattggtaacattcttaaaaccaatttta |
41875401 |
T |
|
| Q |
265 |
cttcttccacatctgttaaggtagaaatataccatttc |
302 |
Q |
| |
|
||||||| |||||||||||||| || | |||||||||| |
|
|
| T |
41875400 |
cttcttcaacatctgttaaggttgatagataccatttc |
41875363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University