View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_high_18 (Length: 327)
Name: NF20966_high_18
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 42770021 - 42770346
Alignment:
| Q |
1 |
atggagaaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggt |
100 |
Q |
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| T |
42770021 |
atggagaaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaaaacttttaaaaacgttcaagaaggt |
42770120 |
T |
|
| Q |
101 |
tttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtt |
200 |
Q |
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| T |
42770121 |
tttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtt |
42770220 |
T |
|
| Q |
201 |
tcgtggttgaaggtgagacctctgatacagtttgagaaggttctgcggttgaaggcgagaaagcagnnnnnnnnttctaagaacattcaagaaggttctg |
300 |
Q |
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| T |
42770221 |
tcgtggttgaaggtgagacctctaatacagtttgagaaggttctgcggttgaaggtgagaaagcagaaaaaaac-tctaagaacattcaagaaggttctg |
42770319 |
T |
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| Q |
301 |
cgactgaaggtgaaa-ctctgaggttc |
326 |
Q |
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| T |
42770320 |
cgactgaaggtgaaacctctgaggttc |
42770346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 42772327 - 42772453
Alignment:
| Q |
53 |
aaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttg |
152 |
Q |
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| T |
42772327 |
aaggtgggaaagcggaagaagaaaact-ctaagaacgttaaagaaggttccgtggctgaaggtgaaatctttgagacggttccagaaggttttgcggccg |
42772425 |
T |
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| Q |
153 |
aaggtgagaaagaggaagaagaaaactc |
180 |
Q |
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| T |
42772426 |
aaggtgagaaagaggaagaagaaaactc |
42772453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 42772857 - 42772772
Alignment:
| Q |
53 |
aaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaa |
139 |
Q |
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|||| ||||||| |||||||||||||| |||| |||||| | ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42772857 |
aaggcgagaaaggggaagaagaaaact-ctaagaacgttgatgaaggttttgtggctaaaggtgaaatctctaagaaggttccaaaa |
42772772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 42773093 - 42772963
Alignment:
| Q |
3 |
ggagaaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttt |
102 |
Q |
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||||| ||||||||| |||||||| |||||| ||||||||||| ||| ||| || ||||| ||||||||||||| |||| ||| ||||||||| ||| |
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| T |
42773093 |
ggagagaaaagctgacgtgaaagggaaaggtggagaaggttctgttgctgaagctgggaaagtagaagaagaaaact-ctaagaacattcaagaagcttt |
42772995 |
T |
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| Q |
103 |
tgtggctgaaggtgaaatctctaagaaggttc |
134 |
Q |
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| T |
42772994 |
tgtggctgaaggtgaaatatccgagaaggttc |
42772963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 216
Target Start/End: Complemental strand, 42772971 - 42772794
Alignment:
| Q |
36 |
agaaggttctgcagctaaaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttcc |
135 |
Q |
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||||||||||| | | ||||||| ||||||| ||||||||||| || |||| |||| ||| ||||||||||||| || |||||| | ||| |||||| |
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| T |
42772971 |
agaaggttctgttgttgaaggtgacaaagcgggagaagaaaact---aagaacgatcaaaaagattttgtggctgaaagtcaaatctatgagatggttcc |
42772875 |
T |
|
| Q |
136 |
aaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtga |
216 |
Q |
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| T |
42772874 |
ataaggttttttggccgaaggcgagaaaggggaagaagaaaactctaagaacgttgatgaaggttttgtggctaaaggtga |
42772794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 42772323 - 42772437
Alignment:
| Q |
149 |
gttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtgagacctctgatacagtttgagaaggttctgcgg |
248 |
Q |
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|||||||||| ||||| ||||||||||||||||| ||||||| ||||||||| ||||| ||||||||| | || ||| || ||| |||||||| ||||| |
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| T |
42772323 |
gttgaaggtgggaaagcggaagaagaaaactctaagaacgttaaagaaggttccgtggctgaaggtgaaatctttgagacggttccagaaggttttgcgg |
42772422 |
T |
|
| Q |
249 |
ttgaaggcgagaaag |
263 |
Q |
| |
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||||| ||||||| |
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| T |
42772423 |
ccgaaggtgagaaag |
42772437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 42771967 - 42772040
Alignment:
| Q |
1 |
atggagaaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaaaact |
79 |
Q |
| |
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|||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
42771967 |
atggagaaaaaagctgaaatgaaacg-----gtaaagaaggttctgcagctgaaggtgagaaagcggaagcagaaaact |
42772040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 42770811 - 42770703
Alignment:
| Q |
90 |
ttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgt |
189 |
Q |
| |
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|||||||| || |||||||||||||||||||||| |||| ||| || ||| || || ||||||||||||||||| || |||||||| ||||| ||| || |
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| T |
42770811 |
ttcaagaaacttatgtggctgaaggtgaaatctcttagaatgtttcacaagattttgtggttgaaggtgagaaagcgg-agaagaaagctctaagaatgt |
42770713 |
T |
|
| Q |
190 |
tcaagaaggt |
199 |
Q |
| |
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| || ||||| |
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| T |
42770712 |
taaataaggt |
42770703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 42772452 - 42772508
Alignment:
| Q |
91 |
tcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgc |
147 |
Q |
| |
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||||||||||| ||||||||||||||||| || | ||||||||| | |||||||||| |
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| T |
42772452 |
tcaagaaggttctgtggctgaaggtgaaacctttgagaaggttctagaaggttctgc |
42772508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 42773058 - 42772980
Alignment:
| Q |
138 |
aaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtga |
216 |
Q |
| |
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||||||||| | ||||| || ||||| |||||||||||||||| |||| ||||||||| ||| |||| ||||||||| |
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| T |
42773058 |
aaggttctgttgctgaagctgggaaagtagaagaagaaaactctaagaacattcaagaagcttttgtggctgaaggtga |
42772980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 42770882 - 42770814
Alignment:
| Q |
7 |
aaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaa |
75 |
Q |
| |
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||||||| ||||||||| || ||| ||||| |||||| | ||||| |||||||||||| ||||||||| |
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|
| T |
42770882 |
aaaaaagttgaagtgaaggggaaaagtaaaaaaggttatacagctgaaggtgagaaagtcgaagaagaa |
42770814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 42771999 - 42772043
Alignment:
| Q |
138 |
aaggttctgcggttgaaggtgagaaagaggaagaagaaaactcta |
182 |
Q |
| |
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|||||||||| | |||||||||||||| ||||| ||||||||||| |
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| T |
42771999 |
aaggttctgcagctgaaggtgagaaagcggaagcagaaaactcta |
42772043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 19195963 - 19195893
Alignment:
| Q |
5 |
agaaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaa |
75 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||||||||| || |||| |||||||||||||||||| |
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| T |
19195963 |
agaagaaagctgaagtgaaagggaaaggtaaagaaggttctgcggcggaaggagagaaagcggaagaagaa |
19195893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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