View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_high_23 (Length: 298)
Name: NF20966_high_23
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 33530602 - 33530326
Alignment:
| Q |
6 |
agcagcacagaaagcggttaaacttgatccaagcaacaccgatgtgaatgtagtggtaagaagggcaagagccgcgacatctgccagattgagtggtaac |
105 |
Q |
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| T |
33530602 |
agcatcacagaaagcggctaaacttgatccaagcaacaccgatgtgaatgtagtggtaagaagggcaagagccgcgacatctgccagattgagtggtaac |
33530503 |
T |
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| Q |
106 |
ttgctcttcaaggcatcaaagttcacagaagcatgtgcggtatacaatgaaggactagagtatgatccattcaactcagttctgttatgtaacagagcag |
205 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33530502 |
ttgctcttcaaggcatcaaagttcacggaagcatgtgcggtatacaatgaaggactagagtatgatccattcaactcagttctgttatgtaacagagcag |
33530403 |
T |
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| Q |
206 |
cttgtcgttctaagctcggccaatttgagaaagcaattgaagactgcaatgtagctcttacagttcagcctaattat |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33530402 |
cttgtcgttctaagctcggccaatttgagaaagcaattgaagactgcaatgtagctcttacagttcagcctaattat |
33530326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 95 - 248
Target Start/End: Complemental strand, 26208329 - 26208176
Alignment:
| Q |
95 |
tgagtggtaacttgctcttcaaggcatcaaagttcacagaagcatgtgcggtatacaatgaaggactagagtatgatccattcaactcagttctgttatg |
194 |
Q |
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||||||| ||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
26208329 |
tgagtggaaacttactcttcaaggcatcaaaattcatggaagcatgtgcagtatacaatgaaggactagatcatgatccacacaactcagttctgttatg |
26208230 |
T |
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| Q |
195 |
taacagagcagcttgtcgttctaagctcggccaatttgagaaagcaattgaaga |
248 |
Q |
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||||||||||| |||||||||||||| || || | ||| |||||||||||||| |
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| T |
26208229 |
caacagagcagcgtgtcgttctaagctagggcagtatgaaaaagcaattgaaga |
26208176 |
T |
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