View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_high_30 (Length: 250)
Name: NF20966_high_30
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 14771469 - 14771218
Alignment:
| Q |
1 |
aatcataaacggtcttgctctcataaaaaagaacaactataaaattcacataatgaacaaataaaactgtgactccagtcaacaatattaattcttcttt |
100 |
Q |
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| T |
14771469 |
aatcataaactgtcttgctctcataaaaaagaacaactataaaattcagataatgagcaaataaaactgtgactccagtcaacaatattaattcttcttt |
14771370 |
T |
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| Q |
101 |
gtagcttttctttgatcctttctttgtgaagtagttgaaatatcttact-----tgcaatttcaacacaattgagttattagtttagtgcgtctatttct |
195 |
Q |
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| T |
14771369 |
gtagcttttctttgaacctttctttgtgaagtagttgaaatatcttacttgacctgcaatttcaacacaattgagttattagtttagtgcgtctttttct |
14771270 |
T |
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| Q |
196 |
ctccaattaatgaatgaaacagcaacnnnnnnncaagtatcatctagcctatg |
248 |
Q |
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| T |
14771269 |
ctacaattaatgaatgaaacagcaac-aaaaaacaagtatcatctagcctatg |
14771218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 47648566 - 47648614
Alignment:
| Q |
91 |
attcttctttgtagcttttctttgatcctttctttgtgaagtagttgaa |
139 |
Q |
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| T |
47648566 |
attcttttttgtagcttttgtttgaatctttctttgtgaagcagttgaa |
47648614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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