View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_high_32 (Length: 249)
Name: NF20966_high_32
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_high_32 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 106 - 249
Target Start/End: Original strand, 37279147 - 37279290
Alignment:
| Q |
106 |
ttgtaagcttttaatcaccacttccgaatcgacacataactctacggccggaaaacctttccgacttgtgagatttaaaccgtctatgacaccccataat |
205 |
Q |
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| T |
37279147 |
ttgtaagcttttaatcaccacttccgaatcgacacataactctacggccagaaaacctttccgacttgtgagatttaaaccctctaagacaccccataat |
37279246 |
T |
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| Q |
206 |
tccgccacaaaagcattacaaatacccaaacttctaaagaaacc |
249 |
Q |
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| T |
37279247 |
tccgccacaaaagcattacaaatacccaaacttctaaagaaacc |
37279290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 37279005 - 37279146
Alignment:
| Q |
11 |
atgaacattccaattcatctccaagagatgattaatatttttaataatatttccgcctattgcattcacactgccattgtaacactggtagccctttgta |
110 |
Q |
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| T |
37279005 |
atgaacattccaattcatctccaagagatgattaatatttttaataatccttccgcctattgcattcacactgccattgtgacactggtagccctttgta |
37279104 |
T |
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| Q |
111 |
agcttttaatcaccacttccgaatcgacacataactctacgg |
152 |
Q |
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| T |
37279105 |
agcttttaatcaccacttccgaatcgacacataactctacgg |
37279146 |
T |
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