View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_high_33 (Length: 249)
Name: NF20966_high_33
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 55370544 - 55370784
Alignment:
| Q |
1 |
ttgtagtagattctctccataatttgtg-aaagcttcacaattcagaaagcaaaaaagagatcaatagtttacgattaaagaaaccatagtgagggaata |
99 |
Q |
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| T |
55370544 |
ttgtagtagattctctccataatttgtgcaaagcttaacaattgagaaagaaaaaaagagatcaatagtttacgattaaagaaactatagtgagggaata |
55370643 |
T |
|
| Q |
100 |
ataaaagcaaaaggaggtcctcaaaaaagcaacaacacttgcagatataattattattctctcatacttcaagctttaaaattcttagaccaattttgac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55370644 |
ataaaagcaaaaggaggtcctcaaaaaagcaacaacacttgcagatataattattattctctcatacttcaagctttaaaattcttagaccacttttgac |
55370743 |
T |
|
| Q |
200 |
tcaaaaaccatcaacctagtatctgttcatgcattcatctc |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
55370744 |
tcaaaaaccatcaacctagtatctgttcatgcattcatctc |
55370784 |
T |
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