View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_high_35 (Length: 239)
Name: NF20966_high_35
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 876021 - 876229
Alignment:
| Q |
12 |
agcatagggtccgggagatcagtaccatgaatcggtatgcaaccaggaatctctaatggttctaataggtctttatttgcggaagaaattgttttgtcta |
111 |
Q |
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| T |
876021 |
agcatagggtccgggagatcagtaccatgaatcggtatgcaaccaggaatctctaatggttctaataggtctttatttgcggaagaaattgttttgtcta |
876120 |
T |
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| Q |
112 |
gacttgaagaatgcaaacaaagtgatagtaacatggttgtggaaggaaaatatgagtaggctaaaatatcgagtttcttggttaatcgtaacacttcgtt |
211 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
876121 |
gacttgaagaatgcaaacaaagcgatagtaacatggttgtggaaggaaaatatgagtaggctaaaatatcgagtttcttggttaatcgtaacacttcgtt |
876220 |
T |
|
| Q |
212 |
tattaaacc |
220 |
Q |
| |
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||||||||| |
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| T |
876221 |
tattaaacc |
876229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 845571 - 845779
Alignment:
| Q |
12 |
agcatagggtccgggagatcagtaccatgaatcggtatgcaaccaggaatctctaatggttctaataggtctttatttgcggaagaaattgttttgtcta |
111 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
845571 |
agcatagggtccgggagatcagtactattaatcggtatgcaaccgggaatctctaatggttctaataggtctttatttgcggaagaaattgttttgtcta |
845670 |
T |
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| Q |
112 |
gacttgaagaatgcaaacaaagtgatagtaacatggttgtggaaggaaaatatgagtaggctaaaatatcgagtttcttggttaatcgtaacacttcgtt |
211 |
Q |
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| T |
845671 |
gatttgaagaatgcaaacaaagcgatagtaacatggttgtggaaggaaaatatgagtaggctaaaatatcgagtttcttggttaatcgtaacacttcgtt |
845770 |
T |
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| Q |
212 |
tattaaacc |
220 |
Q |
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||||||||| |
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| T |
845771 |
tattaaacc |
845779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 45 - 208
Target Start/End: Original strand, 566397 - 566564
Alignment:
| Q |
45 |
ggtatgcaaccaggaatctctaatggttctaataggtctttatttgcggaagaaattgttttgtctagacttgaagaatgcaaa----caaagtgatagt |
140 |
Q |
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||||||||| |||| || |||||||||||||||||||||| | || ||||||||||||| | |||| | |||||||| ||||| |||||||||||| |
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| T |
566397 |
ggtatgcaataaggagtcgctaatggttctaataggtctttgtatgtggaagaaattgttctctctatatttgaagaaagcaaattaacaaagtgatagt |
566496 |
T |
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| Q |
141 |
aacatggttgtggaaggaaaatatgagtaggctaaaatatcgagtttcttggttaatcgtaacacttc |
208 |
Q |
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|||| ||||||||| ||||||||||| |||||||||||||| |||||||| | ||||||||||||||| |
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| T |
566497 |
aacacggttgtggatggaaaatatgaataggctaaaatatctagtttcttagctaatcgtaacacttc |
566564 |
T |
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