View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_high_44 (Length: 218)
Name: NF20966_high_44
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 46835370 - 46835556
Alignment:
| Q |
10 |
agtgagaagaataagactaggaatagagttttggtgcctaaattaagcaagaaagatagagatcaaccatttcagcttaaacatcaatttgattacttct |
109 |
Q |
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| T |
46835370 |
agtgacaagaataagactaggaatagagttttggtgcctaaattaagcaagaaagatagagatcaaccatttcagcttaaacatcaatttgattacttct |
46835469 |
T |
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| Q |
110 |
aagtgtatgtttggattttcagagtttgataaaattattatatcgtgccattgattttaaatggagcttcaataaaattatggtatcacg |
199 |
Q |
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| T |
46835470 |
aagtgtatgtttggtttgtcggagttcgataaa---attatatcatgccattaattttaaatggagcttcaataaaattatggtatcacg |
46835556 |
T |
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