View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20966_high_5 (Length: 431)
Name: NF20966_high_5
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_high_5 |
 | |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 47544253 - 47543847
Alignment:
| Q |
18 |
gtttggataagcaatttaagtaaacacacacttataacacaagtgtttatcatgtcgtatgtgaaacatattgaactcctagaatattgttacctcttaa |
117 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47544253 |
gtttggataagcgatttaagcaaacacacacttataacacaagtgtttatcatgtcgtatgtgaaacatattgaactcctagaatattgttacctcttaa |
47544154 |
T |
|
| Q |
118 |
gtcgttttgcatcggaagggttattgtctccattcatattaacctctccctgatcagctttctcttcgtctgaggatccacttgtcgttgacctgattgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47544153 |
gtcgttttgcatcggaagggttattgtctctattcatattaacctctccctgatcagctttctcttcgtctgaggatccacttgtcgttgacctgattgc |
47544054 |
T |
|
| Q |
218 |
tgtaacaacaggtttctgtggcatggaaggagctccagcagggccacactctacagataaataaaatacaaaagacggataacttttataaatttcccat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47544053 |
tgtaacaacaggtttctgtggcatggaaggagctccagcagggccacactctacagataaataaaatacaaaagacggataacttttataaatttcccat |
47543954 |
T |
|
| Q |
318 |
gcaaatgttttctatgttaaacttcataattgcatacaaatgtgtttaacaattcaaaccttttacagtaggctgaagtccaagttcataaggatcagat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47543953 |
gcaaatgttttctatgttaaacttcataattgcatacaaatgtgtttaacaattcaaaccttttgcagtaggatgaagtccaagttcataaggatcagat |
47543854 |
T |
|
| Q |
418 |
gtctgtg |
424 |
Q |
| |
|
||||||| |
|
|
| T |
47543853 |
gtctgtg |
47543847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 47527761 - 47527660
Alignment:
| Q |
141 |
ttgtctccattcatattaacctctccctgatcagctttctcttcgtctgaggatccacttgtcgttgacctgattgctgtaacaacaggtttctgtggca |
240 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||| ||| |||||||| ||||||||||| |||||| |||| ||||||| | ||||||| ||||| |
|
|
| T |
47527761 |
ttgtctccattcatattaatctctcc---atcaccttcctcatcgtctgatgatccacttgttgttgacttgat---tgtaacagctggtttctttggca |
47527668 |
T |
|
| Q |
241 |
tggaagga |
248 |
Q |
| |
|
|| ||||| |
|
|
| T |
47527667 |
tgcaagga |
47527660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 10266914 - 10266952
Alignment:
| Q |
287 |
aaaagacggataacttttataaatttcccatgcaaatgt |
325 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10266914 |
aaaatacggataacttttataaatttcccatgcaaatgt |
10266952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 10281736 - 10281776
Alignment:
| Q |
62 |
gtttatcatgtcgtatgtgaaacatattgaactcctagaat |
102 |
Q |
| |
|
|||||||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
10281736 |
gtttatcatgtcctatgagaaacacattgaactcctagaat |
10281776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 101431 - 101322
Alignment:
| Q |
121 |
gttttgcatcggaagggttattgtctccattcatattaacctctccctgatcagctttctcttcgtctgaggatccacttgtcgttgacctgattgctgt |
220 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||||||||| |||||| |||| ||| | |||||| |||||||||||||||||||||||||| | ||| |
|
|
| T |
101431 |
gttttgcatcagaagcgttcttgtctccattcatattaatctctccttgataagcctcatcttcgcctgaggatccacttgtcgttgacctg---gttgt |
101335 |
T |
|
| Q |
221 |
aacaacaggtttc |
233 |
Q |
| |
|
||||||||||||| |
|
|
| T |
101334 |
aacaacaggtttc |
101322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 102
Target Start/End: Complemental strand, 101466 - 101435
Alignment:
| Q |
71 |
gtcgtatgtgaaacatattgaactcctagaat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
101466 |
gtcgtatgtgaaacatattgaactcctagaat |
101435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University