View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_10 (Length: 363)
Name: NF20966_low_10
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 12736897 - 12736565
Alignment:
| Q |
1 |
tacattgattctatcacattttaaacatgtgttctctttaataattgcttggataatgtccattgaacattctatcacatttttgaataggttctccaat |
100 |
Q |
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| T |
12736897 |
tacattgattctatcacattttaaacatgtgttctctttaataattgcttggataatgtccattgaacattctatcacatttttgaataggttctccaat |
12736798 |
T |
|
| Q |
101 |
tcatgctagagcacaatacaattgtcactatagaatcgatgagaccttagttgtgttttatgagttgagttttccctcgttattgagtatttggtaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12736797 |
tcatgctagagcacaatacaattgtcactatagaatcgatgagaccttagttgtgttttatgagttgagttttccctcgttattgagtatttggtaaatt |
12736698 |
T |
|
| Q |
201 |
aaaacatagcatatattgttagctgcgactctccatgaatgaatatctatcattgatacagcttgaggcgcttgc-agaaaaggttaaatttcaaatgta |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
12736697 |
aaaacatagcatatattgttagctgcgactctccatgaatgaatatctatcattgatacagcttgaggcgcttgcaagaaaaggttaaattccaaatgta |
12736598 |
T |
|
| Q |
300 |
ttggtggttgaaatcgtattacatattcttcga |
332 |
Q |
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| T |
12736597 |
ttggtggttgaaatcgtattacattttgttcga |
12736565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 23659867 - 23659809
Alignment:
| Q |
259 |
cagcttgaggcgcttgcagaaaaggttaaatttcaaatgtattggtggttgaaatcgta |
317 |
Q |
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| T |
23659867 |
cagcttgagactcttggagaaaaggttaaactccaaacgtattagtggttgaaatcgta |
23659809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 9759936 - 9759977
Alignment:
| Q |
282 |
ggttaaatttcaaatgtattggtggttgaaatcgtattacat |
323 |
Q |
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| T |
9759936 |
ggttaaacttcaaatgtattggtggttgaaagcgaattacat |
9759977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 31635856 - 31635917
Alignment:
| Q |
262 |
cttgaggcgcttgcagaaaaggttaaatttcaaatgtattggtggttgaaatcgtattacat |
323 |
Q |
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| T |
31635856 |
cttgagactcttgctgaaaagattaaacttcaaacgtattggtggttgaaatcgtactacat |
31635917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 13026375 - 13026320
Alignment:
| Q |
259 |
cagcttgaggcgcttgcagaaaaggttaaatttcaaatgtattggtggttgaaatc |
314 |
Q |
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||||||||| | |||||||||||||||||| | |||| |||||||||| ||||||| |
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| T |
13026375 |
cagcttgagactcttgcagaaaaggttaaactccaaacgtattggtggctgaaatc |
13026320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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